View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7028_high_26 (Length: 242)
Name: NF7028_high_26
Description: NF7028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7028_high_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 24255538 - 24255757
Alignment:
| Q |
1 |
tcttctctggatgtatatttttctgttgtatgagaaaaatcaaacttagatgttagactagagttcttctatattcgctaaattaccttgaaccaaagtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24255538 |
tcttctctggatgtatatttttctgttgtatgagaaaaatcaaacttagatgttagactagagttcttctatattcgctaaattaccttgaaccaaagt- |
24255636 |
T |
|
| Q |
101 |
atatatatcttacttggtgtcaaaattttatatatatgaactttggaatagaaattgtaatagtccaaaatctcaagctcagataccccaaaaaagtaga |
200 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24255637 |
-tatatatcttacttggtatcaaaattt--tatatatgaactttggaatagaaattgtaatagtccaaaatctcaagctcagataccccaaaaaagtaga |
24255733 |
T |
|
| Q |
201 |
aatcttgcttcctcggtctaatta |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
24255734 |
aatcttgcttcctcggtctaatta |
24255757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University