View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7028_high_4 (Length: 602)
Name: NF7028_high_4
Description: NF7028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7028_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 540; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 15 - 582
Target Start/End: Original strand, 37697351 - 37697918
Alignment:
| Q |
15 |
acctgtgagttggttgccgtctaaagagattatttcaagcttagggagagaggagagtgaagcagggaggggaccagtgagtttgttgttggtgaagtcg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37697351 |
acctgtgagttggttgccgtctaaagagattatttcaagcttagggagcgaggagagtgaagcagggaggggaccagtgagtttgttgttggtgaagtcg |
37697450 |
T |
|
| Q |
115 |
atccgtaatagggttttcatctttgaaagagtgtttggtatctcgccggagatgctggtatggtatggctgagggtgaggtactcaagattggtgagttt |
214 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37697451 |
atccgtaatagggttttcatatttgaaagagtgtttggtatctcgccggagatgctggtatggtatggctgagggtgaggtaatcaagattggtgagttt |
37697550 |
T |
|
| Q |
215 |
ggagatggacggtgggatagtgccgacgaggttggggatgcgggagagagagaagtcgtcaaggaaagggaggttagtgatggagggtggaaatggaaca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37697551 |
ggagatggacggtgggatagtgccgacgaggttggggatgcgggagagagagaaatcgtcaagaaaagggaggttagtgatggagggtggaaatggaaca |
37697650 |
T |
|
| Q |
315 |
ggtttagggaggttgaggtcgtcgagaccaaggttggcgactcggtctgagtcgcatgagacacccttccatttgtcgttgcagcaatcattgttgtttg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37697651 |
ggtttagggaggttgaggtcgtcgagaccaaggttggcgactcggtctgagtcgcatgagacacccttccatttgtcgttgcagcagtcattgttgtttg |
37697750 |
T |
|
| Q |
415 |
gatcccatgaagagagtttggttgggttgccaaattcttttttgatttggagtaaggcttctttgtcatgttgattgcatttttcggagagtgaaggtat |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37697751 |
gatcccatgaagagagtttggttgggttgccaaattcttttttgatttggagtaaggcttctttgtcatgttgattgcatttttcggagagtgaaggtat |
37697850 |
T |
|
| Q |
515 |
gatgaaacgttgtgtggttatgattaagagaagtagtatgcatgagaggaagtgttgcatggttgatg |
582 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37697851 |
gatgaagcgttgtgtggttatgattaagagaagtagtatgcatgagaggaagtgttgcatggttgatg |
37697918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 15 - 516
Target Start/End: Complemental strand, 38013735 - 38013229
Alignment:
| Q |
15 |
acctgtgagttggttgccgtctaaagagattatttcaagcttagggagagaggagagtgaagcagggaggggaccagtgagtttgttgttggtgaagtcg |
114 |
Q |
| |
|
|||| |||||||||||||||| |||| |||| | ||| ||||||||||||||||||| || |||||||||||||| |||||||||||| ||||||| |
|
|
| T |
38013735 |
acctttgagttggttgccgtccaaagtgatttctgtaaggttagggagagaggagagtgtagtggggaggggaccagttagtttgttgttgtagaagtcg |
38013636 |
T |
|
| Q |
115 |
atccgtaatagggttttcatctttgaaagagtgtttggtatctcgccggagatgctggtatggtatggctgagggtgaggtactcaagattggtgagttt |
214 |
Q |
| |
|
|| ||||| || ||||| |||| ||| || |||||||||||||||||||||||| |||| |||| |||||||||||||||| ||| || ||||||| |
|
|
| T |
38013635 |
atgcgtaagagcgttttgatctgtgagagggtgtttggtatctcgccggagatgttggt---gtat--ctgagggtgaggtacttaagttt--tgagttt |
38013543 |
T |
|
| Q |
215 |
ggagatggacggtg---ggatagtgccgacgaggttggggatgcgggagagagagaagtcgtcaaggaaagggaggttagtgatggagggtggaaatgga |
311 |
Q |
| |
|
| |||||||||||| ||||||||||||| |||||||||||| |||||||||||| | ||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
38013542 |
gaagatggacggtgggaggatagtgccgacaaggttggggatgtgggagagagagagtaaggtaaggaaagggaggttagcgatggagggtggaattgga |
38013443 |
T |
|
| Q |
312 |
acaggtttagggaggttgaggtcgtcgagaccaaggttggcgactcg------------gtctgagtcgcatgagacacccttccatttgtcgttgcagc |
399 |
Q |
| |
|
||||||||||| |||| |||| |||||| ||||||| | ||||| |||||||| |||||||||||| |||||||||| |||||||| |
|
|
| T |
38013442 |
acaggtttaggtaggtcaaggttctcgagatcaaggttttctactcggttggtttgtgtgtctgagttgcatgagacacctttccatttgttgttgcagc |
38013343 |
T |
|
| Q |
400 |
aatcattgttgtttggatcccatgaagagagtttggttgggttgccaaattcttttttgatttggagtaaggcttctttgtcatgttgattgcatttttc |
499 |
Q |
| |
|
| || || |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| || | |||||||| | | ||||| ||||| |
|
|
| T |
38013342 |
agtc--tg-tgtttggatcccatgaagagagttggctagggttgccaaattcttttttgatttggagtagggttcttttgtcatctgggttgcagttttc |
38013246 |
T |
|
| Q |
500 |
ggagagtgaaggtatga |
516 |
Q |
| |
|
||| ||||||| |||| |
|
|
| T |
38013245 |
tgagtgtgaaggaatga |
38013229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 416 - 516
Target Start/End: Complemental strand, 37993802 - 37993702
Alignment:
| Q |
416 |
atcccatgaagagagtttggttgggttgccaaattcttttttgatttggagtaaggcttctttgtcatgttgattgcatttttcggagagtgaaggtatg |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| | | || || |||||||||| ||||||||| ||| ||||||||||| ||| |
|
|
| T |
37993802 |
atcccatgaagagagtttggttgggttgccaaattgttttttgatttgaaagagggtttttttgtcatgtggattgcattgttctgagagtgaaggaatg |
37993703 |
T |
|
| Q |
516 |
a |
516 |
Q |
| |
|
| |
|
|
| T |
37993702 |
a |
37993702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 67 - 173
Target Start/End: Complemental strand, 37994149 - 37994043
Alignment:
| Q |
67 |
gagagtgaagcagggaggggaccagtgagtttgttgttggtgaagtcgatccgtaatagggttttcatctttgaaagagtgtttggtatctcgccggaga |
166 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||| | ||| |||||| || ||||||||| |||| ||| |||||||| |||||||||||||||| |
|
|
| T |
37994149 |
gagagtgatgcggggaggggaccagtgagtttgttgtcgctgatgtcgatggttactagggttttgatctctgagagagtgttaggtatctcgccggaga |
37994050 |
T |
|
| Q |
167 |
tgctggt |
173 |
Q |
| |
|
|| |||| |
|
|
| T |
37994049 |
tgttggt |
37994043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 412 - 509
Target Start/End: Complemental strand, 37989616 - 37989519
Alignment:
| Q |
412 |
ttggatcccatgaagagagtttggttgggttgccaaattcttttttgatttggagtaaggcttctttgtcatgttgattgcatttttcggagagtgaa |
509 |
Q |
| |
|
||||||||||||||||||||| | | ||||||||||||||||| || |||||||||| || | |||||||| | | ||||| ||||| ||| ||||| |
|
|
| T |
37989616 |
ttggatcccatgaagagagttggctagggttgccaaattctttctttatttggagtagggttcttttgtcatctgggttgcagttttctgagtgtgaa |
37989519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 123 - 478
Target Start/End: Complemental strand, 25326518 - 25326162
Alignment:
| Q |
123 |
tagggttttcatctttgaaagagtgtttggtatctcgccggagatgctggtatggtatggctgagggtgaggtactcaagattggtgagtttggagatgg |
222 |
Q |
| |
|
||||||||| |||| ||| || | |||||||||||||||||||||||| || | |||| | ||||| |||||| ||||||||||||||||||| |
|
|
| T |
25326518 |
tagggttttaatctgtgagagtgagtttggtatctcgccggagatgcttgtgccg-----ctgatgatgaggacctcaagtttggtgagtttggagatgg |
25326424 |
T |
|
| Q |
223 |
acggtgggatagtgccgacgaggttggggatgcgggagagagagaagtcgtcaaggaaagggaggttagtg---atggagggtggaaatggaacaggttt |
319 |
Q |
| |
|
| || ||||||||||| ||||||||||||||| | || ||||| || | |||||||||||||||| ||||||||||||| | |||| |||| |
|
|
| T |
25326423 |
aaggcgggatagtgccaacgaggttggggatgttgtcgatagagagaaagtttatgaaagggaggttagtgaatatggagggtggaatttgaacgtgttt |
25326324 |
T |
|
| Q |
320 |
agggaggttgaggtcgtcgagaccaaggttggcgactcgg------tctgagtcgcatgagacacccttccatttgtcgttgcagcaatcattgttgttt |
413 |
Q |
| |
|
||||||||||||||| |||| |||| ||| ||| ||| | |||||||||| |||||| | |||||||| | ||||||| ||| |||| || |
|
|
| T |
25326323 |
ggggaggttgaggtcgaagagatcaagcttgttgacacggtaggtttgtgagtcgcataggacaccttcccatttgtggctgcagcagtca--gttg-tt |
25326227 |
T |
|
| Q |
414 |
ggatcccatgaagagagtttggttgggttgccaaattcttttttgatttggagtaaggcttcttt |
478 |
Q |
| |
|
|| | ||||||||| |||||||||||| |||| | ||||||||| |||| |||| ||||||||| |
|
|
| T |
25326226 |
gggttccatgaagaaagtttggttgggctgcctagttcttttttaattttcagtagggcttcttt |
25326162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University