View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7028_high_5 (Length: 578)
Name: NF7028_high_5
Description: NF7028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7028_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 125 - 562
Target Start/End: Complemental strand, 21484600 - 21484166
Alignment:
| Q |
125 |
acaccattgaaaaccattgcatgtacttcaactacaacaactactacctcttcttcttcctcagcttcttcttcatctgcagcttcttgggctgttttga |
224 |
Q |
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| T |
21484600 |
acaccattgaaaaccattgcatgtacttcaactacaacaactactacctcttcttcttcctcagcttcttcttcatctgcagcttcttgggctgttttga |
21484501 |
T |
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| Q |
225 |
aatcagatgttgaagtagatcatcaaggttatcatcaaaaacatggtcatccattagattatcatcatggtcatcctccaacaactttgtcatcaactgc |
324 |
Q |
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| T |
21484500 |
aatcagatgttgaagtagatcatcaaggttatca---aaaacatggtcatccattagattatcatcatggtcatcctccaacaactttgtcatcaactgc |
21484404 |
T |
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| Q |
325 |
ttctatggagatttctcagcaacagcaacaagatcttggtgtttctaacaatgatgttgttgttggtggtggtgattgcatggatgatgttaacattatg |
424 |
Q |
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| T |
21484403 |
ttctatggagatttctcaacaacagcaacaagatcttggtgtttctaacaatgatgttgttgttggtggtggtgattgcatggatgatgttaacattatg |
21484304 |
T |
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| Q |
425 |
gatacttttggttacatggagcttttagaagctaatgaattttttgaccctgcttcgatttttcaaaatgaagatgaaaaccctttagtggatttcacac |
524 |
Q |
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| T |
21484303 |
gatacttttggttacatggagcttttagaagctaatgaattttttgaccctgcttcgatttttcaaaatgaagatgaaaaccctttagtggatttcactc |
21484204 |
T |
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| Q |
525 |
aagagcaacaagttcaagtgcaagacggatatcaacaa |
562 |
Q |
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| T |
21484203 |
aagagcaacaagttcaagtgcaagacggatatcaacaa |
21484166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 21484724 - 21484631
Alignment:
| Q |
1 |
tgatcaagatggtgatcttttaggtatgaatatgaatgatgatgcatctatgttctatgctgattttccacctttacctgattttccatgcatg |
94 |
Q |
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| T |
21484724 |
tgatcaagatggtgatcttttaggtatgaatatgaatgatgatgcatctatgttctatgctgattttcctcctttacctgattttccatgcatg |
21484631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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