View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7028_high_6 (Length: 555)
Name: NF7028_high_6
Description: NF7028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7028_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 544
Target Start/End: Complemental strand, 32736548 - 32736005
Alignment:
| Q |
18 |
ttaagaataatatataagtggtgaagtacctctatgttccacaatataagtttttccagcaacaacnnnnnnntgtctcatcttatac--------acga |
109 |
Q |
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| T |
32736548 |
ttaagaataatatataagtggtgaagtacctctatgttccacgatataagtttttccagcaacaacaaaaaa-tgtctcatcttatacgtcattttacga |
32736450 |
T |
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| Q |
110 |
taacaatcaannnnnnnnaatcttgtaataaaagtttagatgaatta--cttcaatactaacaagattagaacaagactcaaggttccacaaacttaaca |
207 |
Q |
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| T |
32736449 |
taacaatcaattttttttaatcttgtaataaaagtttagatgaattagacttcaatactaacaagattagaacaagattcaaggtttcataaacttaaca |
32736350 |
T |
|
| Q |
208 |
aaaatacttacatatcattggtaaaagatattatcgacgtgagtgttctcatattatgatcatgctaacaaatgttttaatgacattgtttaagcaactc |
307 |
Q |
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| T |
32736349 |
aaaatacttacatatcattgataaaagatattatcgatgtgagttttctcatattatgatcatgctaacaaatgttttaatgatattgtttaagcaattc |
32736250 |
T |
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| Q |
308 |
at------aaaagaaatttttatcttaaaaatataatgcaaacacatactaaagtgataaacacaaaaatttttgttttgatttcttaaacaatgaccta |
401 |
Q |
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| T |
32736249 |
ataaaaaaaaaaaaaaaaattattttgaaaatataacgcaaacacatgctaaagtgataaatacaaagtttcttcttttaatttcttaaacaatgaccta |
32736150 |
T |
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| Q |
402 |
aaagcatttgttagtattttccataattaatt----aatgaatgaatgatatacatagcacatacaatattctagactgaataataactaaaactaacgt |
497 |
Q |
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| T |
32736149 |
aaagcatttgttagcattttccataattaattagtgaatgaatgaatgatatacatggcacatac-atattctagactgaataataact-aacctaacgt |
32736052 |
T |
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| Q |
498 |
gagattactaaatagacatattaacaacctcattaatgaccagtatt |
544 |
Q |
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| T |
32736051 |
gagattactaaatagacatattaacaacctcattaatgaccagtatt |
32736005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 334
Target Start/End: Original strand, 50093430 - 50093458
Alignment:
| Q |
306 |
tcataaaagaaatttttatcttaaaaata |
334 |
Q |
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| T |
50093430 |
tcataaaagaaatttttatcttaaaaata |
50093458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 36641616 - 36641661
Alignment:
| Q |
265 |
gatcatgctaacaaatgttttaatgacattgtttaagcaactcataa |
311 |
Q |
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| T |
36641616 |
gatcatgctaacaaatgtttaaa-gaaattgtttaagcaactcataa |
36641661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 260 - 346
Target Start/End: Original strand, 6563045 - 6563131
Alignment:
| Q |
260 |
attatgatcatgctaacaaatgttttaatgacattgtttaagcaactcataaaagaaatttttatcttaaaaatataatgcaaacac |
346 |
Q |
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| T |
6563045 |
attaggatcttgttaacaaatgtcttaaggatattgtttaaggaacccataaaaaaaaattatattttaaaaatataaatcaaacac |
6563131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 334
Target Start/End: Complemental strand, 10917975 - 10917947
Alignment:
| Q |
306 |
tcataaaagaaatttttatcttaaaaata |
334 |
Q |
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| T |
10917975 |
tcataaaagaaatttttatcttaaaaata |
10917947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 334
Target Start/End: Original strand, 28007365 - 28007393
Alignment:
| Q |
306 |
tcataaaagaaatttttatcttaaaaata |
334 |
Q |
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| T |
28007365 |
tcataaaagaaatttttatcttaaaaata |
28007393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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