View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7028_high_7 (Length: 493)

Name: NF7028_high_7
Description: NF7028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7028_high_7
NF7028_high_7
[»] chr5 (9 HSPs)
chr5 (175-475)||(22648415-22648706)
chr5 (33-107)||(22648774-22648848)
chr5 (180-227)||(26718866-26718913)
chr5 (180-227)||(26988610-26988657)
chr5 (177-227)||(27530627-27530677)
chr5 (179-227)||(35080689-35080737)
chr5 (36-104)||(36868917-36868985)
chr5 (179-227)||(10407596-10407644)
chr5 (36-104)||(14318426-14318494)
[»] chr6 (3 HSPs)
chr6 (36-107)||(6159432-6159503)
chr6 (177-227)||(20611924-20611974)
chr6 (180-224)||(2477508-2477552)
[»] chr1 (4 HSPs)
chr1 (179-225)||(45758642-45758688)
chr1 (36-100)||(38547083-38547147)
chr1 (180-227)||(39134639-39134686)
chr1 (180-224)||(6221823-6221867)
[»] chr2 (6 HSPs)
chr2 (179-224)||(12133959-12134004)
chr2 (177-221)||(7742055-7742099)
chr2 (180-227)||(16227286-16227333)
chr2 (180-225)||(11952511-11952556)
chr2 (36-104)||(21665744-21665812)
chr2 (36-104)||(38400788-38400856)
[»] chr4 (4 HSPs)
chr4 (178-227)||(40217369-40217418)
chr4 (178-227)||(51691839-51691888)
chr4 (177-225)||(4167843-4167891)
chr4 (180-224)||(27112170-27112214)
[»] chr8 (7 HSPs)
chr8 (36-104)||(11290175-11290243)
chr8 (180-227)||(39332328-39332375)
chr8 (181-227)||(38009071-38009117)
chr8 (40-81)||(8646201-8646242)
chr8 (180-225)||(11290325-11290370)
chr8 (36-81)||(15167482-15167527)
chr8 (37-81)||(15078750-15078794)
[»] chr7 (5 HSPs)
chr7 (178-225)||(12981458-12981505)
chr7 (179-230)||(23020401-23020451)
chr7 (177-227)||(12419414-12419464)
chr7 (178-227)||(2611180-2611229)
chr7 (180-225)||(38971388-38971433)
[»] scaffold0007 (1 HSPs)
scaffold0007 (177-227)||(230781-230831)
[»] scaffold1590 (1 HSPs)
scaffold1590 (36-104)||(302-370)
[»] scaffold1320 (1 HSPs)
scaffold1320 (37-81)||(1346-1390)
[»] scaffold0097 (1 HSPs)
scaffold0097 (36-104)||(38916-38984)
[»] chr3 (1 HSPs)
chr3 (180-224)||(23641240-23641284)


Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 175 - 475
Target Start/End: Complemental strand, 22648706 - 22648415
Alignment:
Q  175 caggcctcttttcacttacagaaccgagtctctggattcgtaggaacggccctctgatacatccatatatatatgcttggtgcaataagattcacatgtc 274  Q
    ||||| |||||||||||||||| | ||||||| ||||||||||||||| ||||  |||||||||||||      ||||||||||||||||||||||||||    
T  22648706 caggcttcttttcacttacagagc-gagtctccggattcgtaggaacgaccct--gatacatccatat------gcttggtgcaataagattcacatgtc 22648616  T
Q  275 atacatatatttgtctagggacctcaaatccatataaaagattaagtttccaactcacatgctgtttaaagggacatgcaatatggtgtttcactctcat 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22648615 atacatatatttgtctagggacctcaaatccatataaaagattaagtttccaactcacatgctgtttaaagggacatgcaatatggtgtttcactctcat 22648516  T
Q  375 ttttattcatagccatgagtgctgctgtcacggttcatcatccttttggtccccaatcatatcgtcaccaatcagtgacatacatgattgcacattcgaa 474  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22648515 ttttattcatagccatgagtgctgcggtcacggttcatcatccttttggtccccaatcatatcgtcaccaatcagtgacatacatgattgcacattcgaa 22648416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 22648848 - 22648774
Alignment:
Q  33 gaaggtggtttgaggtttcttatttatacgatagtgattgtcacatttgaatgtgccacatatatacgacacatt 107  Q
    |||||||||||||||||||||||||||||  ||||||||||||| |||| |||||||||||||||||||||||||    
T  22648848 gaaggtggtttgaggtttcttatttatacagtagtgattgtcacctttggatgtgccacatatatacgacacatt 22648774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 26718913 - 26718866
Alignment:
Q  180 ctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 227  Q
    ||||||||||||||||||||||| ||| |||||| |||||||||||||    
T  26718913 ctcttttcacttacagaaccgagcctccggattcataggaacggccct 26718866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 26988657 - 26988610
Alignment:
Q  180 ctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 227  Q
    ||||||||||||||||||||||| ||| |||||| |||||||||||||    
T  26988657 ctcttttcacttacagaaccgagcctccggattcataggaacggccct 26988610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 27530627 - 27530677
Alignment:
Q  177 ggcctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 227  Q
    |||||||||||||||| ||||||||| ||||  ||||||||||||||||||    
T  27530627 ggcctcttttcacttatagaaccgagcctctaaattcgtaggaacggccct 27530677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 35080737 - 35080689
Alignment:
Q  179 cctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 227  Q
    ||||||||||||||||||  |||| |||| |||||||||||||||||||    
T  35080737 cctcttttcacttacagagtcgagcctctagattcgtaggaacggccct 35080689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 36868985 - 36868917
Alignment:
Q  36 ggtggtttgaggtttcttatttatacgatagtgattgtcacatttgaatgtgccacatatatacgacac 104  Q
    ||||||||||| || || || |||||| |||||||| |||||||||  ||| |||||||||||||||||    
T  36868985 ggtggtttgagattcctcatgtatacggtagtgattttcacatttgggtgtaccacatatatacgacac 36868917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 10407596 - 10407644
Alignment:
Q  179 cctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 227  Q
    |||||||||||||| ||||||||  |||| |||||||||||||| ||||    
T  10407596 cctcttttcacttatagaaccgaacctctagattcgtaggaacgaccct 10407644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 14318494 - 14318426
Alignment:
Q  36 ggtggtttgaggtttcttatttatacgatagtgattgtcacatttgaatgtgccacatatatacgacac 104  Q
    |||||||||||||| || || |||||| |||||||| |||  |||| ||||  ||||||||||||||||    
T  14318494 ggtggtttgaggttcctcatgtatacggtagtgattttcatttttggatgtatcacatatatacgacac 14318426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 6159432 - 6159503
Alignment:
Q  36 ggtggtttgaggtttcttatttatacgatagtgattgtcacatttgaatgtgccacatatatacgacacatt 107  Q
    |||||||||||||| ||||| |||||| ||||||||  ||| ||||||||| || |||||||||||||||||    
T  6159432 ggtggtttgaggttccttatatatacggtagtgatttccacctttgaatgtaccgcatatatacgacacatt 6159503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 20611924 - 20611974
Alignment:
Q  177 ggcctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 227  Q
    |||||||||||||||||||| ||||| ||| | ||||||||||||| ||||    
T  20611924 ggcctcttttcacttacagagccgagcctccgaattcgtaggaacgaccct 20611974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 2477552 - 2477508
Alignment:
Q  180 ctcttttcacttacagaaccgagtctctggattcgtaggaacggc 224  Q
    ||||||||||||||||||||||| |||  |||| |||||||||||    
T  2477552 ctcttttcacttacagaaccgagcctccagatttgtaggaacggc 2477508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 45758642 - 45758688
Alignment:
Q  179 cctcttttcacttacagaaccgagtctctggattcgtaggaacggcc 225  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||    
T  45758642 cctcttttcacttacagagccgagcctctggattcgtaggaacggcc 45758688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 38547147 - 38547083
Alignment:
Q  36 ggtggtttgaggtttcttatttatacgatagtgattgtcacatttgaatgtgccacatatatacg 100  Q
    |||||||||||||| || || |||| |||||||||| |||||||||  ||| |||||||||||||    
T  38547147 ggtggtttgaggttcctcatgtatatgatagtgattttcacatttgggtgtaccacatatatacg 38547083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 39134686 - 39134639
Alignment:
Q  180 ctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 227  Q
    |||||||||||||| || ||||| ||| ||||||||||||||||||||    
T  39134686 ctcttttcacttacggagccgagcctccggattcgtaggaacggccct 39134639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 6221823 - 6221867
Alignment:
Q  180 ctcttttcacttacagaaccgagtctctggattcgtaggaacggc 224  Q
    ||||||||| |||||||||||||||||  ||||||||| ||||||    
T  6221823 ctcttttcatttacagaaccgagtctccagattcgtagaaacggc 6221867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 12134004 - 12133959
Alignment:
Q  179 cctcttttcacttacagaaccgagtctctggattcgtaggaacggc 224  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||    
T  12134004 cctcttttcacttacagaaccgagcctctggattcgtaggtacggc 12133959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 7742099 - 7742055
Alignment:
Q  177 ggcctcttttcacttacagaaccgagtctctggattcgtaggaac 221  Q
    |||||||||||||||||||||||||  ||| ||||||||||||||    
T  7742099 ggcctcttttcacttacagaaccgaacctccggattcgtaggaac 7742055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 16227333 - 16227286
Alignment:
Q  180 ctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 227  Q
    ||||||||||||||||||| ||| ||| | ||||||||||||||||||    
T  16227333 ctcttttcacttacagaactgagcctccgaattcgtaggaacggccct 16227286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 11952556 - 11952511
Alignment:
Q  180 ctcttttcacttacagaaccgagtctctggattcgtaggaacggcc 225  Q
    ||||||||||||||||||||||| ||   |||||||||||||||||    
T  11952556 ctcttttcacttacagaaccgagccttcagattcgtaggaacggcc 11952511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 21665812 - 21665744
Alignment:
Q  36 ggtggtttgaggtttcttatttatacgatagtgattgtcacatttgaatgtgccacatatatacgacac 104  Q
    ||||||||| |||| || || |||||| |||||||| ||||||||  ||||  ||||||||||||||||    
T  21665812 ggtggtttgtggttcctcatgtatacggtagtgattttcacattttgatgtatcacatatatacgacac 21665744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 38400788 - 38400856
Alignment:
Q  36 ggtggtttgaggtttcttatttatacgatagtgattgtcacatttgaatgtgccacatatatacgacac 104  Q
    |||||||||||||| || || |||||| |||||||| |||| |||||||||  | |||||||| |||||    
T  38400788 ggtggtttgaggttcctcatgtatacggtagtgattttcacctttgaatgtatcgcatatatatgacac 38400856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 40217369 - 40217418
Alignment:
Q  178 gcctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 227  Q
    ||||||||||||||||| ||||||| ||||| ||||||||||| ||||||    
T  40217369 gcctcttttcacttacaaaaccgagcctctgaattcgtaggaatggccct 40217418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 51691888 - 51691839
Alignment:
Q  178 gcctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 227  Q
    |||||||||||||| |||| ||||| ||| ||||||||||||||||||||    
T  51691888 gcctcttttcacttgcagagccgagcctccggattcgtaggaacggccct 51691839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 4167891 - 4167843
Alignment:
Q  177 ggcctcttttcacttacagaaccgagtctctggattcgtaggaacggcc 225  Q
    |||||||||||||||||| || |||| ||| ||||||||| ||||||||    
T  4167891 ggcctcttttcacttacaaaatcgagcctccggattcgtacgaacggcc 4167843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 27112170 - 27112214
Alignment:
Q  180 ctcttttcacttacagaaccgagtctctggattcgtaggaacggc 224  Q
    ||||||||||||||||||||||| |||  |||| |||||||||||    
T  27112170 ctcttttcacttacagaaccgagcctccagatttgtaggaacggc 27112214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 11290175 - 11290243
Alignment:
Q  36 ggtggtttgaggtttcttatttatacgatagtgattgtcacatttgaatgtgccacatatatacgacac 104  Q
    |||||||||||||| || || |||||| |||||||| |||| ||||| ||| | |||||||||||||||    
T  11290175 ggtggtttgaggttgctcatgtatacggtagtgattttcacctttgagtgtacaacatatatacgacac 11290243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 39332375 - 39332328
Alignment:
Q  180 ctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 227  Q
    |||||||||| |||||||||||| ||| | ||||||||||||||||||    
T  39332375 ctcttttcacctacagaaccgagcctccgaattcgtaggaacggccct 39332328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 38009117 - 38009071
Alignment:
Q  181 tcttttcacttacagaaccgagtctctggattcgtaggaacggccct 227  Q
    |||||||| ||||||||||||| ||| |||||| |||||||||||||    
T  38009117 tcttttcagttacagaaccgagcctccggattcataggaacggccct 38009071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 8646201 - 8646242
Alignment:
Q  40 gtttgaggtttcttatttatacgatagtgattgtcacatttg 81  Q
    |||||||||||||||| |||||| |||||||| |||||||||    
T  8646201 gtttgaggtttcttatgtatacggtagtgattttcacatttg 8646242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 11290325 - 11290370
Alignment:
Q  180 ctcttttcacttacagaaccgagtctctggattcgtaggaacggcc 225  Q
    ||||||||||||||| |  |||||||||| ||||||||||||||||    
T  11290325 ctcttttcacttacaaagtcgagtctctgaattcgtaggaacggcc 11290370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 15167527 - 15167482
Alignment:
Q  36 ggtggtttgaggtttcttatttatacgatagtgattgtcacatttg 81  Q
    |||||||||||||| || || ||||||||||||||| |||||||||    
T  15167527 ggtggtttgaggttcctcatgtatacgatagtgattttcacatttg 15167482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 15078750 - 15078794
Alignment:
Q  37 gtggtttgaggtttcttatttatacgatagtgattgtcacatttg 81  Q
    ||||||||||||| || || ||||||||||||||| |||||||||    
T  15078750 gtggtttgaggttcctcatgtatacgatagtgattttcacatttg 15078794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 12981458 - 12981505
Alignment:
Q  178 gcctcttttcacttacagaaccgagtctctggattcgtaggaacggcc 225  Q
    |||||||||||| |||||||||||  ||| ||||||||||||||||||    
T  12981458 gcctcttttcacctacagaaccgaacctccggattcgtaggaacggcc 12981505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 23020451 - 23020401
Alignment:
Q  179 cctcttttcacttacagaaccgagtctctggattcgtaggaacggccctctg 230  Q
    |||||||||||||||||||||| | |||  ||||||||||||||||||||||    
T  23020451 cctcttttcacttacagaaccg-gcctccagattcgtaggaacggccctctg 23020401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 12419464 - 12419414
Alignment:
Q  177 ggcctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 227  Q
    |||||||||||||||||| | ||||| ||| |||||| |||||||||||||    
T  12419464 ggcctcttttcacttacaaagccgagcctccggattcataggaacggccct 12419414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 2611229 - 2611180
Alignment:
Q  178 gcctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 227  Q
    |||||||||||||| |||||||||| ||| |||||| |||||||| ||||    
T  2611229 gcctcttttcacttgcagaaccgagcctccggattcataggaacgaccct 2611180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 38971388 - 38971433
Alignment:
Q  180 ctcttttcacttacagaaccgagtctctggattcgtaggaacggcc 225  Q
    ||||||||||||||| | |||||||||| ||||||||| |||||||    
T  38971388 ctcttttcacttacaaagccgagtctctagattcgtagaaacggcc 38971433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 230831 - 230781
Alignment:
Q  177 ggcctcttttcacttacagaaccgagtctctggattcgtaggaacggccct 227  Q
    ||||||||||| |||||||| |||||  || ||||||||||||||||||||    
T  230831 ggcctcttttcccttacagatccgagcttccggattcgtaggaacggccct 230781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1590 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1590
Description:

Target: scaffold1590; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 370 - 302
Alignment:
Q  36 ggtggtttgaggtttcttatttatacgatagtgattgtcacatttgaatgtgccacatatatacgacac 104  Q
    ||||||||||||||  | || |||||| |||||||| |||||||||  ||| || ||||||||||||||    
T  370 ggtggtttgaggttcatcatgtatacggtagtgattttcacatttgggtgtaccgcatatatacgacac 302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1320 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 1346 - 1390
Alignment:
Q  37 gtggtttgaggtttcttatttatacgatagtgattgtcacatttg 81  Q
    ||||||||||||| || || ||||||||||||||| |||||||||    
T  1346 gtggtttgaggttcctcatgtatacgatagtgattttcacatttg 1390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 38916 - 38984
Alignment:
Q  36 ggtggtttgaggtttcttatttatacgatagtgattgtcacatttgaatgtgccacatatatacgacac 104  Q
    |||||||||||||| || || |||||| |||||||| |||||||||  |||  | ||||||||||||||    
T  38916 ggtggtttgaggttcctcatatatacggtagtgattttcacatttgtgtgtatcgcatatatacgacac 38984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 23641284 - 23641240
Alignment:
Q  180 ctcttttcacttacagaaccgagtctctggattcgtaggaacggc 224  Q
    |||||||||| |||||||||||| |||  ||||||||||||||||    
T  23641284 ctcttttcacctacagaaccgagcctccagattcgtaggaacggc 23641240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University