View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7028_high_8 (Length: 487)
Name: NF7028_high_8
Description: NF7028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7028_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 405
Target Start/End: Original strand, 14469659 - 14470046
Alignment:
| Q |
18 |
aacatcttgagatacaagaaataattgaggaatgccatatgtgaagttgtgaactaggaccaaaatcaacaatccaagaatccttggata--atgagcag |
115 |
Q |
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| T |
14469659 |
aacatcttgagatactagaaatagttgaggaatgtcatatgtgaagttgtgaactagaaccaaaatcaacaatccaagaatccatggatattatgaacag |
14469758 |
T |
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| Q |
116 |
taaatatttgaccaggcggtaaagaatgtttttacgagcaaaataaatgattatcatgtaccaaaggaactccagatgctgataagtgttaagcgctacg |
215 |
Q |
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| T |
14469759 |
taaatggttgacctg--ggtaaagaatttttttacgagaaaaataaatgattatcatgtaccaacggaactccagatgctgcttagtgttaagcgctacg |
14469856 |
T |
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| Q |
216 |
acgg-ttctgccgctcttgatgatcacattgatttccttagatacttgctacaccaaacgtgttttcgtagaatccaagaaaaagcaaagtcggtactta |
314 |
Q |
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| T |
14469857 |
acggtttcttcctcccttgatgatgacattgatctccttaaatgcttgctacaccaaacatgtttccgtagaatccaagaaaaagcaaagtcggtactta |
14469956 |
T |
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| Q |
315 |
accatgtagccaagaaatcagaaagaccagagttgtggtattttactaccttcaaggccataacaaaatagtagaaatatacatgtattgt |
405 |
Q |
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| T |
14469957 |
accatgt-gtcaagataacagaaatgccagagttttggtattttactgccttcaaggccagaacaaaatagtagaaatatgcatgtattgt |
14470046 |
T |
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