View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7028_low_10 (Length: 398)
Name: NF7028_low_10
Description: NF7028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7028_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 15 - 383
Target Start/End: Complemental strand, 24493562 - 24493194
Alignment:
| Q |
15 |
tgctctgaaaaccctacatccttccttcaaactgaacaagatcaagcgtaatatccactgccaaagacttcacaacacaagaagttatactttgtgcctc |
114 |
Q |
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| T |
24493562 |
tgctctgaaatccctacatccttccttcaaactgaacaagatcaagtgtaatatccactgcaaaagacttcacaacacaagaagttatactttgtgcctc |
24493463 |
T |
|
| Q |
115 |
tgcaagtccaatgggtctgattctcaagctcctcaaccaggagatacnnnnnnncaagaacttctagcccaaattgtcacgcttcaaactcgaaaagtcc |
214 |
Q |
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| T |
24493462 |
tgcaagtccaatgggtctgattctcaagctcctcaaccaggagatacaaaaaaacaagaacttctagcccaaattgtcacgcttcaaactcgaaaaatcc |
24493363 |
T |
|
| Q |
215 |
gccttacagaatatcttgatgagagatctgcatacttaactcaatttggtgaaaaagtaaactctgagtttgaaaagattggagaagatgcactcaaaga |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493362 |
gccttacagaatatcttgatgagagatctgcatacttaactcaatttggtgaaaaagcaaactctgagtttgaaaagattggagaagatgcactcaaaga |
24493263 |
T |
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| Q |
315 |
attagatgaagctagtgccagagtatgcttgcttccactttcaagctcaccgtgtgaaatgtaaataat |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24493262 |
attagatgaagctagtgccagagtatgcttgcttccactttcgagctcaccgtgtgaaatgtaaataat |
24493194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 341
Target Start/End: Complemental strand, 4329287 - 4329153
Alignment:
| Q |
207 |
aaaagtccgccttacagaatatcttgatgagagatctgcatacttaactcaatttggtgaaaaagtaaactctgagtttgaaaagattggagaagatgca |
306 |
Q |
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|||||| || ||||| || ||| | ||||| ||||||| ||| || || || ||||||||| ||| || |||| |||| |||||||| |||||||| |
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| T |
4329287 |
aaaagttcgtcttacggattatttggatgaaagatctgaatatttgacacagtttggtgaagaagctaaagctgaaattgataagattggtgaagatgct |
4329188 |
T |
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| Q |
307 |
ctcaaagaattagatgaagctagtgccagagtatg |
341 |
Q |
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|| |||| ||||||||||||||||| |||||||| |
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| T |
4329187 |
cttaaaggattagatgaagctagtgatagagtatg |
4329153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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