View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7028_low_12 (Length: 392)
Name: NF7028_low_12
Description: NF7028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7028_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 55 - 377
Target Start/End: Complemental strand, 34473486 - 34473164
Alignment:
| Q |
55 |
aactatgcattttttaatttctactttccctcgcgccaaggaaatcaaaataagaaagcatttgggttacattgagtagtcacttgggttacttcaatgc |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34473486 |
aactatgcattttttaatttctactttcccccgcgccaaggaaatcaaaataagaaagcatttgggttacattgagtagtaacttgggttacttcaatgc |
34473387 |
T |
|
| Q |
155 |
acaatgttcaacccaatgatgccaaaactatgggtttttgaagttattattatttgtctattactctaatttgcacaaaatttagcataaatttgaccga |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34473386 |
acaatgttcaacccaatgatgccaaaactatgggtttttgaagttattattatttgtctattactctaatttgcacaaaatttagcataaatttgaccga |
34473287 |
T |
|
| Q |
255 |
tgaatgtcttccaagtgttcttcatcctggatgttttagttctatataagtaagtacctacctctacctcgtaacccatcaaaccaaaaaatgttttctg |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34473286 |
tgaatgtcttccaagtgttcttcatcctggatgttttagttctatttaagtaagtacctacctctacctcgtaacccatcaaaccaaaaaatgttttctg |
34473187 |
T |
|
| Q |
355 |
ttttttacaccttgtactcacag |
377 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
34473186 |
ttttttacacgttgtactcacag |
34473164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 27630944 - 27630894
Alignment:
| Q |
295 |
tctatataagtaagtacctacctctacctcgtaacccatcaaaccaaaaaa |
345 |
Q |
| |
|
|||||||| ||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
27630944 |
tctatatatgtaagtagctacctctaccttgtaacccatcaaaccaaaaaa |
27630894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 34523563 - 34523513
Alignment:
| Q |
295 |
tctatataagtaagtacctacctctacctcgtaacccatcaaaccaaaaaa |
345 |
Q |
| |
|
|||||||| ||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
34523563 |
tctatatatgtaagtagctacctctaccttgtaacccatcaaaccaaaaaa |
34523513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 295 - 370
Target Start/End: Complemental strand, 34490101 - 34490025
Alignment:
| Q |
295 |
tctatataagtaagtacctacctctacctcgtaacccatcaaaccaaaaaatg-ttttctgttttttacaccttgta |
370 |
Q |
| |
|
|||||||| ||||||| ||||| |||||| ||||||||||||||||||||| | ||||| |||||||| ||||||| |
|
|
| T |
34490101 |
tctatatatgtaagtagctacccctaccttgtaacccatcaaaccaaaaaaagcttttcatttttttacgccttgta |
34490025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 34528321 - 34528279
Alignment:
| Q |
166 |
cccaatgatgccaaaactatgggtttttgaagttattattatt |
208 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
34528321 |
cccaatgatgccaaaattaagggtttttgaagttattattatt |
34528279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 186 - 280
Target Start/End: Original strand, 34370725 - 34370824
Alignment:
| Q |
186 |
gggtttttgaagttattattatttgtctatt-----actctaatttgcacaaaatttagcataaatttgaccgatgaatgtcttccaagtgttcttcatc |
280 |
Q |
| |
|
|||| ||||||||||||||||||||||| | |||| |||||||| ||| || || |||||| |||| |||||||| |||||||||||||||||| |
|
|
| T |
34370725 |
gggtctttgaagttattattatttgtctgctctgctactcaaatttgcataaacttaagtgtaaattcgaccaatgaatgtgttccaagtgttcttcatc |
34370824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 24467767 - 24467852
Alignment:
| Q |
187 |
ggtttttgaagttattattatttgtctattactctaatttgcacaaaatttagcataaatttgaccgatgaatgtcttccaagtgt |
272 |
Q |
| |
|
|||||||||||||||||||||||||||| || || |||||||| ||| ||||| |||||| ||||||||||||| |||||||||| |
|
|
| T |
24467767 |
ggtttttgaagttattattatttgtctactattcaaatttgcataaactttagtgtaaattcgaccgatgaatgtgttccaagtgt |
24467852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 185 - 273
Target Start/End: Original strand, 26368743 - 26368831
Alignment:
| Q |
185 |
tgggtttttgaagttattattatttgtctattactctaatttgcacaaaatttagcataaatttgaccgatgaatgtcttccaagtgtt |
273 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||| ||||| | | |||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
26368743 |
tgggtttttgaagttattattatttgtctgcttctcaaattttccctaaatttagtgtaaatttgaccaatgaatgtcttccaagtgtt |
26368831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 280
Target Start/End: Complemental strand, 10528452 - 10528358
Alignment:
| Q |
186 |
gggtttttgaagttattattatttgtctattactctaatttgcacaaaatttagcataaatttgaccgatgaatgtcttccaagtgttcttcatc |
280 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| |||||||| ||| ||||| |||||| |||| |||||||| |||||||||||| ||||| |
|
|
| T |
10528452 |
gggtttttgatgttattattatttgtctgctactcaaatttgcataaactttagtgtaaattcgaccaatgaatgtgttccaagtgttcatcatc |
10528358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 189 - 279
Target Start/End: Complemental strand, 10535345 - 10535255
Alignment:
| Q |
189 |
tttttgaagttattattatttgtctattactctaatttgcacaaaatttagcataaatttgaccgatgaatgtcttccaagtgttcttcat |
279 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||| ||| ||||| |||||| |||| ||||||| ||||||||||||||||| |
|
|
| T |
10535345 |
tttttgaagttattattatttgtctgctactcaaatttgcataaactttagtgtaaattcgaccaatgaatgagttccaagtgttcttcat |
10535255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University