View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7028_low_13 (Length: 391)
Name: NF7028_low_13
Description: NF7028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7028_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 375
Target Start/End: Original strand, 21483810 - 21484166
Alignment:
| Q |
19 |
cttttgttgtgaagatgactagtttgaacccattcaagaatgagcttcaacaattgtttcatcccttcttttccaccacctaatctcctagcagcacttt |
118 |
Q |
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| T |
21483810 |
cttttgttatgaagatgactagtttgaacccattcaagaatgagcttcaacaattgtttcatcccttcttttccaccacctaatctcctagcagcacttt |
21483909 |
T |
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| Q |
119 |
cgatcgtcgatttcttaagcttcacattcctcaaatcattcgcggagacactgtctttgttcgatttaagccactccaagaaaaccatactcatttcatc |
218 |
Q |
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| T |
21483910 |
caatcgttgatttcttaagcttcacattcctcaaatcattcgcggagacactgtctttgttcgatttaagccactccaagaaaaccatactcatttcatc |
21484009 |
T |
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| Q |
219 |
acttacaccatcacatgcacctaattcatctccttgaatactctcttccccatttacaccgtcacacacaaaaacatcgtcgttattctcctcgatattc |
318 |
Q |
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| T |
21484010 |
acttacaccatcacatgcacctaattcatctccttgaatactctcttccccatttacaccgtcacacacaaaaacatcgtcgttattctcctcgatattc |
21484109 |
T |
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| Q |
319 |
acttgttgcggtttattttcccgatcatcatgcactatcatcggaacttgttgatgt |
375 |
Q |
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| T |
21484110 |
acttgttgcggtttattttcccgatcatcatgcactatcatcggaacttgttgatgt |
21484166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 298 - 375
Target Start/End: Original strand, 26551516 - 26551593
Alignment:
| Q |
298 |
tcgttattctcctcgatattcacttgttgcggtttattttcccgatcatcatgcactatcatcggaacttgttgatgt |
375 |
Q |
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| T |
26551516 |
tcgttattttcctcaatattcacttgttgtggtttattttccctttcatcatgcactatcattgaaatttgttgatgt |
26551593 |
T |
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