View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7028_low_14 (Length: 341)
Name: NF7028_low_14
Description: NF7028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7028_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 10 - 150
Target Start/End: Original strand, 41198155 - 41198295
Alignment:
| Q |
10 |
attattcttattgttataacatcaaaaatatatgttaactgtccatcattctctaaggtttgtgttgttgatttataagtgttgtgttattactctctct |
109 |
Q |
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| T |
41198155 |
attattcttattgttataacatcaaaaatatatgttaactgtccatcattctctaaggtttgtgttgttgatttataagtattgtgttattactctctct |
41198254 |
T |
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| Q |
110 |
atatatatgtgcatatattatgaatttatgatagtgatgaa |
150 |
Q |
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| T |
41198255 |
atatatatgtgcatatattatgaatttatgatagtgatgaa |
41198295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 219 - 319
Target Start/End: Original strand, 41198364 - 41198464
Alignment:
| Q |
219 |
aaaatttctgattcaattaacttgttgtgatgggtcctgtgagaggaatcaaaaagagaagaaagacagagaagagttatgacaataataatgattctgc |
318 |
Q |
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| T |
41198364 |
aaaatttctgattcaattaacttgttgtgatgggtcctgtgagaggaatcaaaaagagaagaaagacagagaagagttatgacaataataatgattctgc |
41198463 |
T |
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| Q |
319 |
t |
319 |
Q |
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| T |
41198464 |
t |
41198464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 150
Target Start/End: Original strand, 41208145 - 41208274
Alignment:
| Q |
14 |
ttcttattgttataacatcaaaaatatatgttaactgtccatcattctctaaggtttgtgttg-ttgatttataagtgttgtgttattactctctctata |
112 |
Q |
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| T |
41208145 |
ttcttattgttataacatcaaacatatatg-taacggtccatcattctct-aggtttgtgttgtttgacttataagtgttgtcttattactc------ta |
41208236 |
T |
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| Q |
113 |
tatatgtgcatatattatgaatttatgatagtgatgaa |
150 |
Q |
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| T |
41208237 |
tatatgtatatatattatgaatttatgatagtgatgaa |
41208274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 227 - 309
Target Start/End: Original strand, 41208349 - 41208431
Alignment:
| Q |
227 |
tgattcaattaacttgttgtgatgggtcctgtgagaggaatcaaaaagagaagaaagacagagaagagttatgacaataataa |
309 |
Q |
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| T |
41208349 |
tgattcaattaacttgttgtgatgggtcctgtgagaggaaccaagaagagaagaaagacagagaagacacatgacaataataa |
41208431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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