View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7028_low_16 (Length: 316)
Name: NF7028_low_16
Description: NF7028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7028_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 43096807 - 43096517
Alignment:
| Q |
19 |
cattgcttcctcaagatttttagctttgca-agtccatttataagcgcattgaaggtcacaaccgaaagttcacatccaagcttctccatccgattaaat |
117 |
Q |
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| T |
43096807 |
cattgcttcctcaagatttttagctttgcacagtccatttataagcgcattgaaggtcacaatcgaaagttcacatccaagcttctccatccgattaaat |
43096708 |
T |
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| Q |
118 |
aattcttttgcctcagcaaccattcctcgcttacacatttcacatatgagaattgtgtgcgtgcaaacattgtgcttggaaattttaagatgaagagact |
217 |
Q |
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| T |
43096707 |
aattcttttgcctcaacaaccattcctcacttacacatttcacatatgagaattgtgtgcgtgcaaacattgcgctcggaaatttcaagatgaagagact |
43096608 |
T |
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| Q |
218 |
gtgctcgattcaaaagacttacatcacataaaccttgaattacaacattgtagcaataagcatcaggagttaaacctatttgattcatctc |
308 |
Q |
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| T |
43096607 |
gtgctcgattcaaaagacctacatcacataaaccttgaattacaacattgtagcaataagcatcatgagttaaacctatttgattcatctc |
43096517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 21 - 308
Target Start/End: Original strand, 17487753 - 17488041
Alignment:
| Q |
21 |
ttgcttcctcaagatttttagctttgca-agtccatttataagcgcattgaaggtcacaaccgaaagttcacatccaagcttctccatccgattaaataa |
119 |
Q |
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| T |
17487753 |
ttgctttctcaagattattagctttgcacagtccatttataagcgtattgaaggtcacaaccgaaggttcacatccaagcttctccatttgattaaataa |
17487852 |
T |
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| Q |
120 |
ttcttttgcctcagcaaccattcctcgcttacacatttcacatatgagaattgtgtgcgtgcaaacattgtgcttggaaattttaagatgaagagactgt |
219 |
Q |
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| T |
17487853 |
ttcttgtgcctcagcaaccattcctcgcttacacatttcacatatgagaattgtgtgcgtgcaaacattgtgctcggaaatttcaagacgaagagactgt |
17487952 |
T |
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| Q |
220 |
gctcgattcaaaagacttacatcacataaaccttgaattacaacattgtagcaataagcatcaggagttaaacctatttgattcatctc |
308 |
Q |
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| T |
17487953 |
gctcgattcaaaagacctacatcacataaaccttgaattacagcattgtagcaataagcatcaggagttaaacctatctgagtcatctc |
17488041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 21 - 308
Target Start/End: Complemental strand, 6779325 - 6779037
Alignment:
| Q |
21 |
ttgcttcctcaagatttttagctttgca-agtccatttataagcgcattgaaggtcacaaccgaaagttcacatccaagcttctccatccgattaaataa |
119 |
Q |
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| T |
6779325 |
ttgctttctcaagatttttagctttgcacagtccatttataagcgtattgaaggtcacaaccgaaggttcacatccaagcttctccatttgattaaataa |
6779226 |
T |
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| Q |
120 |
ttcttttgcctcagcaaccattcctcgcttacacatttcacatatgagaattgtgtgcgtgcaaacattgtgcttggaaattttaagatgaagagactgt |
219 |
Q |
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| T |
6779225 |
ttcttgtgcctcagcaaccattcctcgcttacacatttcacatatgagaattgtgtgcgtgcaaacattgtgctcggaaatttcaagactaagagactgt |
6779126 |
T |
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| Q |
220 |
gctcgattcaaaagacttacatcacataaaccttgaattacaacattgtagcaataagcatcaggagttaaacctatttgattcatctc |
308 |
Q |
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| T |
6779125 |
gctcgattcaaaagatctacatcacataaaccttgaattacagcattgtagcaataagaatcaggagttaaacctatctgagtcatctc |
6779037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 21 - 309
Target Start/End: Complemental strand, 22423897 - 22423608
Alignment:
| Q |
21 |
ttgcttcctcaagatttttagctttgca-agtccatttataagcgcattgaaggtcacaaccgaaagttcacatccaagcttctccatccgattaaataa |
119 |
Q |
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|||||| ||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
22423897 |
ttgctttctcaagattattagctttgcacagtccatttataagcgtattgaaggtcacaaccgaaggttcacatccaagcttctccatttgattaaataa |
22423798 |
T |
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| Q |
120 |
ttcttttgcctcagcaaccattcctcgcttacacatttcacatatgagaattgtgtgcgtgcaaacattgtgcttggaaattttaagatgaagagactgt |
219 |
Q |
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| T |
22423797 |
ttcttgtgcctcagcaaccattcctcgcttacacatttcacatatgagaattgtgtgcgtgcaaacattgtgctcagaaatttcaagaagaagagaatgt |
22423698 |
T |
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| Q |
220 |
gctcgattcaaaagacttacatcacataaaccttgaattacaacattgtagcaataagcatcaggagttaaacctatttgattcatctca |
309 |
Q |
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| T |
22423697 |
gctcgattcaaaagacctacatcacataaaccttgaattacagcattgtagcaataagcatcaggagttaaacctatctgagtcatctca |
22423608 |
T |
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