View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7028_low_17 (Length: 303)
Name: NF7028_low_17
Description: NF7028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7028_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 33 - 286
Target Start/End: Complemental strand, 10301779 - 10301526
Alignment:
| Q |
33 |
atatttatgttaagtcttttgatatgaataaaatttagccacacctgaaacaaaacaccctcgatccgcccctgtctagaatcttcttcatttggtcttg |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10301779 |
atatttatgttaagtcttttgatatgaataaaatttagccacacctgaaacaaaacaccctcgatctgcccctgtctagaatcttcttcatttggtcttg |
10301680 |
T |
|
| Q |
133 |
aaaatttcatttgacgttatttatccttagtcttgctagcatttgaggatgacactattttatttcttgaatcttcatctgatttgtcttttttcttatc |
232 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10301679 |
aaaatttcatttgatgttatttatccttagtcttgctagcatttgaagatgacacttttttatttcttgaatcttcatctgatttgtcttttttcttatc |
10301580 |
T |
|
| Q |
233 |
atggttgtcctgtttctctggttattcactcatagttccttttatctctgcaac |
286 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10301579 |
atggttgtcatgtttctctggtaattcactcatagttccttttatctctgcaac |
10301526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 33 - 286
Target Start/End: Complemental strand, 2591614 - 2591363
Alignment:
| Q |
33 |
atatttatgttaagtcttttgatatgaataaaatttagccacacctgaaacaaaacaccctcgatccgcccctgtctagaatcttcttcatttggtcttg |
132 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2591614 |
atatatatgttaagtcttttgatatgaataaaatttagccacacctgaaacaaaac--ccttgatccgcccctgtctagaatattcttcatttggtcttg |
2591517 |
T |
|
| Q |
133 |
aaaatttcatttgacgttatttatccttagtcttgctagcatttgaggatgacactattttatttcttgaatcttcatctgatttgtcttttttcttatc |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2591516 |
aaaatttcatttgacgttatttatccttagtcttgctagcatttgaagatgacacttttttatttcttgaatcttcatctgatttgtcttttttcttatc |
2591417 |
T |
|
| Q |
233 |
atggttgtcctgtttctctggttattcactcatagttccttttatctctgcaac |
286 |
Q |
| |
|
|||||| || ||||||||| || ||||||| ||||||||||||||||||||||| |
|
|
| T |
2591416 |
atggttttcatgtttctctagtaattcacttatagttccttttatctctgcaac |
2591363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 33 - 286
Target Start/End: Complemental strand, 22224354 - 22224102
Alignment:
| Q |
33 |
atatttatgttaagtcttttgatatgaataaaatttagccacacctgaaacaaaacaccctcgatccgcccctgtctagaatcttcttcatttggtcttg |
132 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22224354 |
atatatatgttaagtattttgatatgaataaaatttagccacacctgaaacaaaactcc-tcgatcttcccctgtctagaatcttcttcatttggtcttg |
22224256 |
T |
|
| Q |
133 |
aaaatttcatttgacgttatttatccttagtcttgctagcatttgaggatgacactattttatttcttgaatcttcatctgatttgtcttttttcttatc |
232 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22224255 |
aaaatttcatttgacgttatttatccttggtcttgctagcatttgaagatgacacttttttatttcttgaatcttcatctgatttgtcttttttcttatc |
22224156 |
T |
|
| Q |
233 |
atggttgtcctgtttctctggttattcactcatagttccttttatctctgcaac |
286 |
Q |
| |
|
||||||||| ||||||| |||| ||| |||||| |||||||||||||||||||| |
|
|
| T |
22224155 |
atggttgtcatgtttctttggtaatttactcattgttccttttatctctgcaac |
22224102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University