View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7028_low_19 (Length: 289)
Name: NF7028_low_19
Description: NF7028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7028_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 25 - 278
Target Start/End: Original strand, 12346074 - 12346326
Alignment:
| Q |
25 |
atatcataaggccctctatagagatgcaagtatgctctacacgcgcctcagaaatgaggatcttgtgtatataaaaaacatctgactagtgatccatgct |
124 |
Q |
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| T |
12346074 |
atatcataagtccctctatagagatgcaagtatgctctacactcgcctcagaaatgaggatcttgtgtatc-agaaaacatctgactagtgatccatgct |
12346172 |
T |
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| Q |
125 |
acggtcctctctattatgagatgctagtcttaattgataatctgtgcttgagactttttcatgcctatagttggctatttgttgtctcgcttgatgattc |
224 |
Q |
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| T |
12346173 |
atggtcctctctattatgagatgccagtcttaattgataatctgtgcttgagactttttcatgcctatggttggctatttgttgtctcgcttgatgattc |
12346272 |
T |
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| Q |
225 |
agttgaggctaatctcatgatatgggaggctcccggccagtgtggtatcagagc |
278 |
Q |
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| T |
12346273 |
agttgaggctaatctcatgatatgggaggctcccggccagtgtggtatcagagc |
12346326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 12366289 - 12366547
Alignment:
| Q |
19 |
atgttcatatcataaggccctctatagagatgcaagtatgctctacacgcgcctcagaaatgaggatcttgtgtatataaaaaacatctgactagtgatc |
118 |
Q |
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| T |
12366289 |
atgttcatatcataagtccctctatagagatgcaagtatgctctacactcgccttagaaatgagcatcttgtgtatc-agaaaacatctgactagtgatc |
12366387 |
T |
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| Q |
119 |
catgctacggtcctctctattatgagatgctagtcttaattgataatctgtgcttgagactttttcatgcctatagttggctatttgttgtctcgcttga |
218 |
Q |
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| T |
12366388 |
catgctacggtcctctttattatgagatgccagtcttaattgataatctgtgcttgagactttttcatgcctatggttggctatttgttgtctcgcttga |
12366487 |
T |
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| Q |
219 |
tgattcagttgaggctaatctcatgatatgggaggctcccggccagtgtggtatcagagc |
278 |
Q |
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| T |
12366488 |
ttattcagttgaggctaatctcatgatatggtaggctcccggccagtgtggtatcagagc |
12366547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 96 - 274
Target Start/End: Complemental strand, 19965431 - 19965253
Alignment:
| Q |
96 |
taaaaaacatctgactagtgatccatgctacggtcctctctattatgagatgctagtcttaattgataatctgtgcttgagactttttcatgcctatagt |
195 |
Q |
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| T |
19965431 |
taaaaaacatctgactatagatccatgctacggtgctctctattatgggatgtcagtcttaattgacaatttgtgcttgagacttttttatgcctatggt |
19965332 |
T |
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| Q |
196 |
tggctatttgttgtctcgcttgatgattcagttgaggctaatctcatgatatgggaggctcccggccagtgtggtatca |
274 |
Q |
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| T |
19965331 |
tggctatctattatctcgcttgatgatttagttaatactaatctcatgatatgtgaagctcccggtcagtctggtatca |
19965253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 181
Target Start/End: Complemental strand, 12470381 - 12470240
Alignment:
| Q |
40 |
ctatagagatgcaagtatgctctacacgcgcctcagaaatgaggatcttgtgtatataa-aaaacatctgactagtgatccatgctacggtcctctctat |
138 |
Q |
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||||||||||||||||| ||||||||| ||||||||||| ||||| ||| ||| ||| | |||||||||||||| ||||||||| ||| |||||||||| |
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| T |
12470381 |
ctatagagatgcaagtacgctctacactcgcctcagaaacgagga-cttttgtgtatcagaaaacatctgactattgatccatgttacattcctctctat |
12470283 |
T |
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| Q |
139 |
tatgagatgctagtcttaattgataatctgtgcttgagacttt |
181 |
Q |
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||||| ||| |||||||||||| || | |||| |||||||||| |
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| T |
12470282 |
tatgaaatgatagtcttaattgctagtttgtggttgagacttt |
12470240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 18904820 - 18904878
Alignment:
| Q |
37 |
cctctatagagatgcaagtatgctctacacgcgcctcagaaatgaggatcttgtgtata |
95 |
Q |
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| T |
18904820 |
cctctatatagatgcaagtatgctctacactcgcctcataaatgacgatcttgtgtata |
18904878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 42 - 223
Target Start/End: Complemental strand, 18635880 - 18635699
Alignment:
| Q |
42 |
atagagatgcaagtatgctctacacgcgcctcagaaatgaggatcttgtgtatataaaaaacatctgactagtgatccatgctacggtcctctctattat |
141 |
Q |
| |
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|||||||||| ||||| |||||||| | |||| ||||||||||||||| |||| | |||||||||||||| |||||| ||||| |||||| |||||| |
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| T |
18635880 |
atagagatgctagtattctctacactcacctctgaaatgaggatcttgcgtatc-agaaaacatctgactatatatccatactacgatcctctatattat |
18635782 |
T |
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| Q |
142 |
gagatgctagtcttaattgataatctgtgcttgagact-ttttcatgcctatagttggctatttgttgtctcgcttgatgatt |
223 |
Q |
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| T |
18635781 |
gggatgccaattttaattgataatctgtgattgagactttttttatgtctatggttggctatttatttttttgcttgatgatt |
18635699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 182
Target Start/End: Original strand, 6314516 - 6314661
Alignment:
| Q |
38 |
ctctatagagatgcaagtatgctctacacgcgcctcagaaatgaggatcttgtgtatataaaaaacatctgactagtgatccatgctacggtcctctcta |
137 |
Q |
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||||||||||||| |||||||| || ||| | ||| |||||||| |||||||| ||| |||||||||| |||||| | ||| ||| || ||||||||||| |
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| T |
6314516 |
ctctatagagatgtaagtatgcgctccactcaccttagaaatgacgatcttgtatat-taaaaaacatatgactattaatctatgttatggtcctctcta |
6314614 |
T |
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| Q |
138 |
ttatgagatg--ctagtcttaattgataatctgtgcttgagactttt |
182 |
Q |
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||| |||||| |||| |||||| || | |||||||||||||||| |
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| T |
6314615 |
ttacgagatggtatagttttaatttttagtatgtgcttgagactttt |
6314661 |
T |
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