View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7028_low_21 (Length: 267)
Name: NF7028_low_21
Description: NF7028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7028_low_21 |
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| [»] scaffold1215 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 34473525 - 34473774
Alignment:
| Q |
1 |
tagaagggaagaaaagcaaccaccgtagttgagagaagggaagtgtttggaatgaaaacatcagagaagtggctgaattgaataagttgggatatcctgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34473525 |
tagaagggaagaaaagcaaccaccgtagttgagagaagggaagtgtttggaatgaaaacatcagagaagtggctgaattgaataagttgggatatcctgt |
34473624 |
T |
|
| Q |
101 |
agatcgacagataattgagaaatgtactataaagtacaataatttggaaatctttgataacaccatcaggtgcataattttccagaccacaagaagcaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34473625 |
agatcgacagataattgagaaatgtactataaagtacaataatttggaaatctttgataacaccatcaggtgcataattttccagaccacaagaagcaat |
34473724 |
T |
|
| Q |
201 |
atttttaatgaatgtagataacagtgaacgagttacaatgatattaactt |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34473725 |
atttttaatgaatgtagataacagtgaacgagttacaatgatattaactt |
34473774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 91 - 247
Target Start/End: Complemental strand, 34372972 - 34372816
Alignment:
| Q |
91 |
gatatcctgtagatcgacagataattgagaaatgtactataaagtacaataatttggaaatctttgataacaccatcaggtgcataattttccagaccac |
190 |
Q |
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||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||| |
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| T |
34372972 |
gatatcctgtagatccgcagataactgagaaatgtactgtaaagtacaataatttggaaatccatggtaacaccatcaggtgcataattttccataccac |
34372873 |
T |
|
| Q |
191 |
aagaagcaatatttttaatgaatgtagataacagtgaacgagttacaatgatattaa |
247 |
Q |
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| T |
34372872 |
aagaagcaatatttttattaaatgtagagaacaatgaataatttacaatgatcttaa |
34372816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 91 - 247
Target Start/End: Original strand, 27625781 - 27625937
Alignment:
| Q |
91 |
gatatcctgtagatcgacagataattgagaaatgtactataaagtacaataatttggaaatctttgataacaccatcaggtgcataattttccagaccac |
190 |
Q |
| |
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|||||| |||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| || ||||||||| |||| |||||||||||| || || |
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| T |
27625781 |
gatatcatgtagatccacaaataattgagaaatgtaatataaagtacaataatttggaaatctatggtaacaccattaggtacataattttccatacgac |
27625880 |
T |
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| Q |
191 |
aagaagcaatatttttaatgaatgtagataacagtgaacgagttacaatgatattaa |
247 |
Q |
| |
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||||| ||||||||||| | |||||||| |||| |||| |||| ||||||| ||||| |
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| T |
27625881 |
aagaaacaatatttttattaaatgtagagaacaatgaatgagtaacaatgacattaa |
27625937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 91 - 247
Target Start/End: Original strand, 34511554 - 34511710
Alignment:
| Q |
91 |
gatatcctgtagatcgacagataattgagaaatgtactataaagtacaataatttggaaatctttgataacaccatcaggtgcataattttccagaccac |
190 |
Q |
| |
|
|||||| |||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| || || |||||| |||| |||||||||||| || || |
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| T |
34511554 |
gatatcatgtagatccacaaataattgagaaatgtaatataaagtacaataatttggaaatctatggtagcaccattaggtacataattttccatacgac |
34511653 |
T |
|
| Q |
191 |
aagaagcaatatttttaatgaatgtagataacagtgaacgagttacaatgatattaa |
247 |
Q |
| |
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||||| ||||||||||| | |||||||| |||| |||| |||| ||||||| ||||| |
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| T |
34511654 |
aagaaacaatatttttattaaatgtagagaacaatgaatgagtaacaatgacattaa |
34511710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 91 - 247
Target Start/End: Original strand, 34467610 - 34467766
Alignment:
| Q |
91 |
gatatcctgtagatcgacagataattgagaaatgtactataaagtacaataatttggaaatctttgataacaccatcaggtgcataattttccagaccac |
190 |
Q |
| |
|
|||||| |||||||| ||| ||| |||||||||||| |||||||||||||||| ||||||||| || ||||||||| |||| || |||||||| ||||| |
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| T |
34467610 |
gatatcatgtagatccacaaatagttgagaaatgtaatataaagtacaataatctggaaatctatggtaacaccattaggtatatgattttccataccac |
34467709 |
T |
|
| Q |
191 |
aagaagcaatatttttaatgaatgtagataacagtgaacgagttacaatgatattaa |
247 |
Q |
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||||| ||||||||||| | |||||||| |||| |||| |||| |||| |||||||| |
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| T |
34467710 |
aagaaacaatatttttattaaatgtagagaacaatgaatgagtaacaacgatattaa |
34467766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 99 - 207
Target Start/End: Original strand, 34477572 - 34477680
Alignment:
| Q |
99 |
gtagatcgacagataattgagaaatgtactataaagtacaataatttggaaatctttgataacaccatcaggtgcataattttccagaccacaagaagca |
198 |
Q |
| |
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||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| || |||||||||| ||| |||||||||| | ||||||||||||| |
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| T |
34477572 |
gtagatccacagataattgagaaatgtactaaaaagtccaataatttggaaatcaatggtaacaccatctggtacataattttcaataccacaagaagca |
34477671 |
T |
|
| Q |
199 |
atattttta |
207 |
Q |
| |
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||| ||||| |
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| T |
34477672 |
ataatttta |
34477680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1215 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: scaffold1215
Description:
Target: scaffold1215; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 91 - 250
Target Start/End: Original strand, 341 - 500
Alignment:
| Q |
91 |
gatatcctgtagatcgacagataattgagaaatgtactataaagtacaataatttggaaatctttgataacaccatcaggtgcataattttccagaccac |
190 |
Q |
| |
|
|||||| |||||||| ||||||| ||||||||||| | |||||||||||||||||||||||| || || |||||||||||||||||||||||||||||| |
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| T |
341 |
gatatcttgtagatctgcagataactgagaaatgtattgtaaagtacaataatttggaaatctatggtatcaccatcaggtgcataattttccagaccac |
440 |
T |
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| Q |
191 |
aagaagcaatatttttaatgaatgtagataacagtgaacgagttacaatgatattaactt |
250 |
Q |
| |
|
||||||||||||||||| | |||| ||| |||| || | |||||||||| |||||||||| |
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|
| T |
441 |
aagaagcaatatttttattaaatgcagagaacaatggatgagttacaataatattaactt |
500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 91 - 250
Target Start/End: Original strand, 10526347 - 10526506
Alignment:
| Q |
91 |
gatatcctgtagatcgacagataattgagaaatgtactataaagtacaataatttggaaatctttgataacaccatcaggtgcataattttccagaccac |
190 |
Q |
| |
|
|||||| |||||||| ||||||| ||||||||||| | |||||||||||||||||||||||| || || |||||||||||||||||||||||||||||| |
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|
| T |
10526347 |
gatatcttgtagatctgcagataactgagaaatgtattgtaaagtacaataatttggaaatctatggtatcaccatcaggtgcataattttccagaccac |
10526446 |
T |
|
| Q |
191 |
aagaagcaatatttttaatgaatgtagataacagtgaacgagttacaatgatattaactt |
250 |
Q |
| |
|
||||||||||||||||| | |||| ||| |||| || | |||||||||| |||||||||| |
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|
| T |
10526447 |
aagaagcaatatttttattaaatgcagagaacaatggatgagttacaataatattaactt |
10526506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 91 - 207
Target Start/End: Original strand, 10533169 - 10533285
Alignment:
| Q |
91 |
gatatcctgtagatcgacagataattgagaaatgtactataaagtacaataatttggaaatctttgataacaccatcaggtgcataattttccagaccac |
190 |
Q |
| |
|
|||||| |||||||| ||||||| |||||||||||| |||||||||||||||||||||||| | |||| ||||||||||| |||||||||| ||||| |
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| T |
10533169 |
gatatcttgtagatccgcagataaccgagaaatgtactgtaaagtacaataatttggaaatctatcgtaacgccatcaggtgcctaattttccataccac |
10533268 |
T |
|
| Q |
191 |
aagaagcaatattttta |
207 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
10533269 |
aagaagcaatattttta |
10533285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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