View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7028_low_23 (Length: 262)
Name: NF7028_low_23
Description: NF7028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7028_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 157 - 261
Target Start/End: Original strand, 33871210 - 33871314
Alignment:
| Q |
157 |
ccactaaaccacattcctccttagtcttacaaacggtatcccattgaaaccaaacacataattagtttatttgtagagatttgttattttttcttctcac |
256 |
Q |
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| T |
33871210 |
ccactaaaccacattcctccttagtcttacaaacggtatcccattgaaaccaaacacataattagtttatttgtagagatttgttattttttcttttcat |
33871309 |
T |
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| Q |
257 |
tcgac |
261 |
Q |
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||||| |
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| T |
33871310 |
tcgac |
33871314 |
T |
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Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 33871072 - 33871152
Alignment:
| Q |
19 |
agaaacttagtgtgcttaagcaaacnnnnnnnnctaatgtatcttaattatatcatatacttaattttaaaaatctcgcat |
99 |
Q |
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|||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33871072 |
agaaacttagtgtgtttaagccaacaaaaaaaactaatgtatcttaattatatcatatacttaattttaaaaatctcgcat |
33871152 |
T |
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