View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7028_low_9 (Length: 484)
Name: NF7028_low_9
Description: NF7028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7028_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 17 - 481
Target Start/End: Complemental strand, 54277014 - 54276559
Alignment:
| Q |
17 |
aaaagcacgggaaaaatcatcattgtttgaaggaacgctgtcgtggttccaatacgtgatatcattaaacgtcgcactagtctcccacgaattagagctt |
116 |
Q |
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| T |
54277014 |
aaaagcacgggaaaaatcatcattgtttgaaggaacgctgtcgtggttccaatacgtgatatcattaaaggtcacactagtctcccacgaattagagctt |
54276915 |
T |
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| Q |
117 |
tcatcggattttttggccgaatttttctttcccaaaacaaaacctacagagcatagcaatcatgagtcatcatcacaatgagaaagaaagagataagaag |
216 |
Q |
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||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54276914 |
tcaac------------cgaatttttctttcccaaaacaaaacctacagagcatagcaatcatgagtcatcatcacaatgagaaagaaagagataagaag |
54276827 |
T |
|
| Q |
217 |
a---gaaaacaagtttggttaccagagtagttatgaggaagagggagagtagttccttcgagcaaccttcctcgaaaatgcgattgctgtaatggtaaac |
313 |
Q |
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| T |
54276826 |
aagagaaaacaagtttggttaccagagtagttatgaggaagagggagagtagttccttcgagcaaccttcctcgaaaatgcgattgctgtaatggtaaac |
54276727 |
T |
|
| Q |
314 |
cgtcttctccgacgacgccggtaggtttaggtttgaaatactgagagacttcagtgggaccatcgtgcttgatgcagcagggaagtagatgaacacgccc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54276726 |
cgtcttctccgacgacgccggtaggtttaggtttgaaatactgagagacttcggtgggaccatcgtgcttgatgcagcagggaagtagatgaacacgccc |
54276627 |
T |
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| Q |
414 |
actcagatcctcgataccgtctcgctttaggcctatcttcgcctccccgccctttttcatctctctcg |
481 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
54276626 |
actcagatcctcgataccgtctcgctttaggtctatcttcgcctccccgcccttttccatctctctcg |
54276559 |
T |
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