View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7029_high_3 (Length: 298)
Name: NF7029_high_3
Description: NF7029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7029_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 31698005 - 31698177
Alignment:
| Q |
19 |
taacattcatgcattgcaggagttagtttattttctcttaagtaaacagtataatcaaattccatggaaatgagttaatttccgttccaaaaacttgccc |
118 |
Q |
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| T |
31698005 |
taacattcatgcattgcaggagttggtttattttctcttaagtaaacagtataatcaaattccatggaaatgagttcatttccgttccaaaaacttgccc |
31698104 |
T |
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| Q |
119 |
actagataacacatctaccttcacatgataacacatcttactaattgttgaacaaacgatgtacataactcat |
191 |
Q |
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| T |
31698105 |
attagataacacatctaccttcacatgataacacatcttactaattgttgaacaaacgaggtacataactcat |
31698177 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 181
Target Start/End: Complemental strand, 41106845 - 41106689
Alignment:
| Q |
25 |
tcatgcattgcaggagttagtttattt-tctcttaagtaaacagtataatcaaattccatggaaatgagttaatttccgttccaaaaacttgcccactag |
123 |
Q |
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| T |
41106845 |
tcatgcattgcatgatttagtttatttgtcttttatataaatagtagaatcaaactccatgcaaaagagtttattttcatttcaaaaaatttcctactag |
41106746 |
T |
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| Q |
124 |
ataacacatcta-ccttcacatgataacacatcttactaattgttgaacaaacgatgta |
181 |
Q |
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| T |
41106745 |
acaacacatctatccatc-cagaataatacatcttact-attgttgaacgaacgatgta |
41106689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 133
Target Start/End: Original strand, 29456764 - 29456836
Alignment:
| Q |
61 |
taaacagtataatcaaattccatggaaatgagttaatttccgttccaaaaacttgcccactagataacacatc |
133 |
Q |
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| T |
29456764 |
taaatagtagaatcaaacttcatgcaaaggagtttattttcgttccaaaaacttgtctactagataacacatc |
29456836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 40945520 - 40945604
Alignment:
| Q |
66 |
agtataatcaaattccatggaaatgagttaatttccgttcca-aaaacttgcccactagataacacatctaccttcacatgataa |
149 |
Q |
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| T |
40945520 |
agtagaatcaaacttcatgcaaaggagttcatttatgttccacaaaacttgccgactagataacacattcaccatcacatgataa |
40945604 |
T |
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