View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7029_high_6 (Length: 260)
Name: NF7029_high_6
Description: NF7029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7029_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 68 - 256
Target Start/End: Complemental strand, 34983274 - 34983086
Alignment:
| Q |
68 |
ttgataggtgcctaaaatggatcaaaacaaagtgtcaatatacaaagaataaaaccgtccaaaattcgtcgttacatattagcataaccaagataaagtg |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34983274 |
ttgataggtgcctaaaatggatcaaaacaaagtgtcaatatacaaagaataaaaccgtccaaaattcgtcgttacatattagcataaccaagataaagtg |
34983175 |
T |
|
| Q |
168 |
atagattagaccaccaagaaataggacagctaaatcatctgaagttgaacctaatattcttcttgaagacatatgcgcaccaccaaact |
256 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34983174 |
acagattagaccaccaagaaataggacaactaaatcatctgaagttgaacctaatatccttcttgaagacatatgcgcaccaccaaact |
34983086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 34983713 - 34983658
Alignment:
| Q |
20 |
cttcttagtcacacaagaaacaataaaacatttatataagggataacattgatagg |
75 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34983713 |
cttcttagtcacacaagaaacaataaaacacttatataagggataacattgatagg |
34983658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 13058869 - 13058929
Alignment:
| Q |
127 |
caaaattcgtcgttacatattagcataaccaagataaagtgatagattagaccaccaagaa |
187 |
Q |
| |
|
||||||||||| |||||||||||| ||| ||||| ||||||||| ||| |||| |||||| |
|
|
| T |
13058869 |
caaaattcgtcattacatattagcgtaatcaagacaaagtgatatattgaaccatcaagaa |
13058929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 132
Target Start/End: Complemental strand, 29797986 - 29797932
Alignment:
| Q |
79 |
ctaaaatggatcaaaacaaagtgtcaatata-caaagaataaaaccgtccaaaat |
132 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| |||||||||||| ||||||||| |
|
|
| T |
29797986 |
ctaaaagggatcaaaacaaagtgtcagtatataaaagaataaaactgtccaaaat |
29797932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University