View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7029_low_2 (Length: 444)
Name: NF7029_low_2
Description: NF7029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7029_low_2 |
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| [»] chr5 (3 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Complemental strand, 38382870 - 38382444
Alignment:
| Q |
18 |
cttactttatatattaattgtattaattccattggtatgtagaccaataatgttttggatcatcaaacgtacaccagaaggaagacctgtgaaggatagt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38382870 |
cttactttatatattaattgtattaattccattggtatgtagaccaataatgttttggatcatcaaacgtacaccagaaggaagacctgtgaaggatagt |
38382771 |
T |
|
| Q |
118 |
tacatttatgttatcatttcaatggtttttgtttttggcattttgtcagttaagattaatcaagaatttgccataggagcttttattttgggactgtctg |
217 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38382770 |
tacctttatgttatcatttcaatggtttttgtttttggcattttgtcagttaagattaatcaagaatttgccataggagctttcattttgggactgtctg |
38382671 |
T |
|
| Q |
218 |
ttcctgaaggacctcctttaggatcagcattggttaagaagcttcagttttttagtacaacattctttttgccaatctttgtaacaacttgtgtgttgaa |
317 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38382670 |
ttcctgaaggacctcctttaggatctgcattggttaagaagcttcagtttttttgtacaacattctttttgccaatctttgtaaccacttgtgtgttgaa |
38382571 |
T |
|
| Q |
318 |
agcagatttttcaatggatttttcatcatctatgatggtgtatactggtttagcggtccttgtaactcacttggtcaaaatgacagcatgctttataact |
417 |
Q |
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||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38382570 |
agcagatttttcaatggatgtttcatcatctgttatggtgtatactggtttagcggtccttgtaactcacttggtcaaaatgacagcatgctttataact |
38382471 |
T |
|
| Q |
418 |
gccctttgttgcaagatgcctgtcact |
444 |
Q |
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| T |
38382470 |
gccctttgttgcaagatgcctgtcact |
38382444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 38391728 - 38391304
Alignment:
| Q |
18 |
cttactttatatattaattgtattaattccattggtatgtagaccaataatgttttggatcatcaaacgtacaccagaaggaagacctgtgaaggatagt |
117 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38391728 |
cttactttatatattgtttgtattaataccattggtatgtagaccaataatgttttggatcatcaaacatacaccagaaggaagacctgtgaaggatagt |
38391629 |
T |
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| Q |
118 |
tacatttatgttatcatttcaatggtttttgtttttggcattttgtcagttaagattaatcaagaatttgccataggagcttttattttgggactgtctg |
217 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| | | |||| ||| ||||||||||||||| |
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| T |
38391628 |
tacatttatgttatcatttcaatggtttttgttcttggtattttgtcagttaagattaatcaagaatttgtcttgggagttttcgttttgggactgtctg |
38391529 |
T |
|
| Q |
218 |
ttcctgaaggacctcctttaggatcagcattggttaagaagcttcagttttttagtacaacattctttttgccaatctttgtaacaacttgtgtgttgaa |
317 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38391528 |
ttcctgaaggacctcctttaggatctgcattggttaagaagcttcagttttttagtacaacattctttttgccaatctttgtaacaacttgtgtgttgaa |
38391429 |
T |
|
| Q |
318 |
agcagatttttcaatggatttttcatcatctatgatggtgtatactggtttagcggtccttgtaactcacttggtcaaaatgacagcatgctttataact |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
38391428 |
agcagatttttcaatggatttttcatcatctatgatggtgtatactggtttagcggtccttgtaactcacttggtcaaaatggcagcattatttataact |
38391329 |
T |
|
| Q |
418 |
gccctttgttgcaagatgcctgtca |
442 |
Q |
| |
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| |||||||||||| || ||||||| |
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| T |
38391328 |
gtcctttgttgcaaaatacctgtca |
38391304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 38400317 - 38399893
Alignment:
| Q |
18 |
cttactttatatattaattgtattaattccattggtatgtagaccaataatgttttggatcatcaaacgtacaccagaaggaagacctgtgaaggatagt |
117 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38400317 |
cttactttatacattaattgcattaattccattggtatgtagaccaataatgttttggatcatcaaacgtacaccagaaggaagacctgtgaaggatagt |
38400218 |
T |
|
| Q |
118 |
tacatttatgttatcatttcaatggtttttgtttttggcattttgtcagttaagattaatcaagaatttgccataggagcttttattttgggactgtctg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| | |||||||||| |||||||||||||||| |
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| T |
38400217 |
tacatttatgttatcatttcaatggtttttgttcttggtattttgtcagttaagattaatcaattatttggcttaggagctttcattttgggactgtctg |
38400118 |
T |
|
| Q |
218 |
ttcctgaaggacctcctttaggatcagcattggttaagaagcttcagttttttagtacaacattctttttgccaatctttgtaacaacttgtgtgttgaa |
317 |
Q |
| |
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||||||||||||||||| ||||||| ||||||||||||||||||||||| ||| |||||||||| |||||||| ||||||||||| ||||||||||| || |
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| T |
38400117 |
ttcctgaaggacctcctctaggatctgcattggttaagaagcttcagttctttggtacaacattatttttgcctatctttgtaactacttgtgtgtttaa |
38400018 |
T |
|
| Q |
318 |
agcagatttttcaatggatttttcatcatctatgatggtgtatactggtttagcggtccttgtaactcacttggtcaaaatgacagcatgctttataact |
417 |
Q |
| |
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||| ||||||||||||||| | ||||||| | | ||||| | | |||||||| |||||||| ||||||||||||||||||| |||||| ||||||||| |
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| T |
38400017 |
agcggatttttcaatggatatgtcatcatatgttatggtatctgctggtttactggtccttgcaactcacttggtcaaaatggcagcattatttataact |
38399918 |
T |
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| Q |
418 |
gccctttgttgcaagatgcctgtca |
442 |
Q |
| |
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|||||||||||||| || ||||||| |
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| T |
38399917 |
gccctttgttgcaaaatacctgtca |
38399893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 444
Target Start/End: Original strand, 37839764 - 37840190
Alignment:
| Q |
18 |
cttactttatatattaattgtattaattccattggtatgtagaccaataatgttttggatcatcaaacgtacaccagaaggaagacctgtgaaggatagt |
117 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
37839764 |
cttacttttcatattttttgtattaattccattggtatgtagaccaataatgttttggatcatcaaacatacaccagaaggaagacctgtgaaagatagt |
37839863 |
T |
|
| Q |
118 |
tacatttatgttatcatttcaatggtttttgtttttggcattttgtcagttaagattaatcaagaatttgccataggagcttttattttgggactgtctg |
217 |
Q |
| |
|
|||||||||||||||||||||| ||||||| || |||| ||||| ||||||||||||||||||||||||| | ||||||| || |||||||||||||||| |
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|
| T |
37839864 |
tacatttatgttatcatttcaacggtttttcttcttggtattttttcagttaagattaatcaagaatttgtcttaggagccttcattttgggactgtctg |
37839963 |
T |
|
| Q |
218 |
ttcctgaaggacctcctttaggatcagcattggttaagaagcttcagttttttagtacaacattctttttgccaatctttgtaacaacttgtgtgttgaa |
317 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
37839964 |
ttcctgaaggagctcctttaggatctacattggttaagaagcttcagttctttggtacaacattctttttgcctatctttgtaactacttgtgtgttgaa |
37840063 |
T |
|
| Q |
318 |
agcagatttttcaatggatttttcatcatctatgatggtgtatactggtttagcggtccttgtaactcacttggtcaaaatgacagcatgctttataact |
417 |
Q |
| |
|
||| ||||||||||||||||| |||||| ||| ||||||| || |||||||| |||||| | || |||| ||||||||||||||||||| ||||||||| |
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|
| T |
37840064 |
agctgatttttcaatggatttgacatcatatattatggtgtctaatggtttagtggtcctagcaattcacatggtcaaaatgacagcatgttttataact |
37840163 |
T |
|
| Q |
418 |
gccctttgttgcaagatgcctgtcact |
444 |
Q |
| |
|
|| |||||||||||||||||||||||| |
|
|
| T |
37840164 |
gctctttgttgcaagatgcctgtcact |
37840190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 141 - 442
Target Start/End: Original strand, 37831745 - 37832038
Alignment:
| Q |
141 |
ggtttttgtttttggcattttgt-cagttaagattaatcaagaatttgccataggagcttttattttgggact----gtctgttcctgaaggacctcctt |
235 |
Q |
| |
|
|||||||||| |||| ||||| | | |||||||| ||||||||||| | |||||||||| |||||||||| || ||||| |||||||||||||| |
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|
| T |
37831745 |
ggtttttgttcttggtatttttttcggttaagatagatcaagaatttatcttaggagctttcgttttgggactatttgtttgttcgtgaaggacctcctt |
37831844 |
T |
|
| Q |
236 |
taggatcagcattggttaagaagcttcagttttttagtacaacattctttttgccaatctttgtaacaacttgtgtgttgaaagcagatttttcaatgga |
335 |
Q |
| |
|
|| ||| | |||||||||||||||||||| ||| || ||||||| ||||| | ||||||||| | || ||||| ||||||||||| |
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|
| T |
37831845 |
taacatctgtgttggttaagaagcttcagttctttggtccaacattatttttttctatctttgtatctacctgtgt-------------ttttcaatgga |
37831931 |
T |
|
| Q |
336 |
tttttcatcatctatgatggtgtatactggtttagcggtccttgtaactcacttggtcaaaatgacagcatgctttataactgccctttgttgcaagatg |
435 |
Q |
| |
|
||||| |||| |||| ||||||| | ||||||| | | ||| ||| | ||||||||| | || ||||||||| ||||||||||| | |||||||||||| |
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|
| T |
37831932 |
tttttaatcacctattatggtgtctcctggtttggtgatccatgttaatcacttggttagaaagacagcatgttttataactgcattgtgttgcaagatg |
37832031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 5622550 - 5622628
Alignment:
| Q |
65 |
taatgttttggatcatcaaacgtacaccagaaggaagacctgtgaaggatagttacatttatgttatcatttcaatggt |
143 |
Q |
| |
|
|||||||||||||||||| || ||| |||||||||||||||| | ||| ||||||| |||| |||||||| |||||| |
|
|
| T |
5622550 |
taatgttttggatcatcagacatactaaagaaggaagacctgtggatgatggttacatctatggtatcattttaatggt |
5622628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 135
Target Start/End: Complemental strand, 35299169 - 35299099
Alignment:
| Q |
65 |
taatgttttggatcatcaaacgtacaccagaaggaagacctgtgaaggatagttacatttatgttatcatt |
135 |
Q |
| |
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|||||||||||||||||| || ||| |||||||||||||||| | ||| ||||||| |||| ||||||| |
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| T |
35299169 |
taatgttttggatcatcagacatactaaagaaggaagacctgtggatgatggttacatctatggtatcatt |
35299099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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