View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7030_high_4 (Length: 408)
Name: NF7030_high_4
Description: NF7030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7030_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 232 - 398
Target Start/End: Complemental strand, 31700087 - 31699921
Alignment:
| Q |
232 |
cggcaacgcactgatgaaagggacgaagatgagaacgatgtaaagagcaagaccagcgccggtggtggcgaagaaagtggaaatgggacgaacggttaca |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31700087 |
cggcaacgcactgatgaaagggacgaagatgagaacgatgtaaagagcaagaccagcgccggtggtggcaaagaaagtggaaatgggacgaacggttaca |
31699988 |
T |
|
| Q |
332 |
acgacggcaccgacagcgatggtggcgagtagttgaagagcgatgatgacgtagacttttctgatga |
398 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31699987 |
acgacggcaccgacggcgatggtggcgagtagttgaagagcgatgatgacgtagacttttctgatga |
31699921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 31700303 - 31700170
Alignment:
| Q |
14 |
aatgataagaatgttaccgctagtgaaagcacagctcaatccaacaacaaaagaaagcgagagagtgaaaaccgcaagaagaaggtaattaatcggatgc |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31700303 |
aatgaaaagaatgttaccgctagtgaaagcacagctcaatccaacaacaaaagaaagcgagagagtgaaaaccgcaagaagaaggtaattaatcggatgc |
31700204 |
T |
|
| Q |
114 |
gtctgataataatagtaaagtggacacaacgctg |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
31700203 |
gtctgataataatagtaaagtggacacaacgctg |
31700170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University