View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7030_high_5 (Length: 400)
Name: NF7030_high_5
Description: NF7030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7030_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 45 - 399
Target Start/End: Original strand, 37114040 - 37114397
Alignment:
| Q |
45 |
atgtatgctcattacttgttgagtcggggctcgcaaggatccaacagattttagtgttcatagtgttgaaagagatacttgcaaattattca---acaat |
141 |
Q |
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| T |
37114040 |
atgtatgctcattacttgttgagtcggggctcgcaaggatccaacagattttagtgttcatagtgttgaaagagatacttgcaaattattcatcaacaat |
37114139 |
T |
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| Q |
142 |
atatgaaaacaatattaatttattgtgttttgataaattaatttaacatatgattttaataaagaagataacataactactataatttgaatttaatatt |
241 |
Q |
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| T |
37114140 |
atatgaaaacaatattaatttattgtgttttgataaattaatttaacatatgattttaataaagaagataacataactactataatttgaatttaatatt |
37114239 |
T |
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| Q |
242 |
atactctttcaattaacaacatatgacataggtcctcttgataagtcaattcaatcaaattattttataatattgaaattctcttctatcaatattataa |
341 |
Q |
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| T |
37114240 |
atactctttcaattaacaacatatgacataggtcctcttgataagtcaattcaatcaaattattttataatattgaaattctcttctatcaatattataa |
37114339 |
T |
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| Q |
342 |
ttctgtaaaattgttttttggtctacatgcttctgtttctctcactttttctatcgat |
399 |
Q |
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| T |
37114340 |
ctctgtaaaattgttttttggtctacatgcttctgtttctctcactttttctatcgat |
37114397 |
T |
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