View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7030_high_6 (Length: 290)
Name: NF7030_high_6
Description: NF7030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7030_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 272
Target Start/End: Complemental strand, 37805793 - 37805534
Alignment:
| Q |
13 |
aaaatcaatattttagttatggacaacattagtaaattaaattaaataatttgatccacttcctttttgtcctataagaaaaaatgtcacaaaatataag |
112 |
Q |
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| T |
37805793 |
aaaatcaagattttagttatgaacaacattagtaaatttaattaaataatttgacccacttcctttttgtcctaaaagaaaaa-tgtcacaaaatataag |
37805695 |
T |
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| Q |
113 |
cccgat-tttgtttaattaaaataaaaaagttagagctattaccatatggactcaagtctccttccacaccggtcatctgaattttttaaagagnnnnnn |
211 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37805694 |
cccgatctttgtttaattaaaataaaaaagttagagctattaccatatggactcaagtctccttccacaccggccatctgaattttttaaagagaaaaaa |
37805595 |
T |
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| Q |
212 |
ncatattaagttgtggaaaataaaaacaatagcatgactaaaaagaatgtaaagaatatgt |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37805594 |
acatattaagttgtggaaaataaaaacaatagcatgactaaaaagaatgtaaagaatatgt |
37805534 |
T |
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