View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7030_low_1 (Length: 253)
Name: NF7030_low_1
Description: NF7030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7030_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 74 - 241
Target Start/End: Complemental strand, 40971876 - 40971714
Alignment:
| Q |
74 |
aataaggattaaaaggggtggtgtattacattacaataattaacaaattattacctccattgagccaaagggtgagaggctttttgtgagggtcatgatc |
173 |
Q |
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| T |
40971876 |
aataaggattaaaaggggtggtgtattaca-----ataattaacaaattattacctccattgagccaaagggtgagaggctttttgtgagggtcatgatc |
40971782 |
T |
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| Q |
174 |
agcctcaacaaaataatagaagaggcttctcccatgccttacatctatatcaatatagccagcatatt |
241 |
Q |
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| T |
40971781 |
agcctcaacaaaataatagaagaggcttctcccatgccttacatctatatcaatatagccagcatatt |
40971714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 120 - 241
Target Start/End: Original strand, 40961897 - 40962018
Alignment:
| Q |
120 |
attattacctccattgagccaaagggtgagaggctttttgtgagggtcatgatcagcctcaacaaaataatagaagaggcttctcccatgccttacatct |
219 |
Q |
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| T |
40961897 |
attattacctccattgagccatagggtgagaggctttttgtgagggagatggtcagcctcaacaaaataatagaagagactcctcccatgttttatatct |
40961996 |
T |
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| Q |
220 |
atatcaatatagccagcatatt |
241 |
Q |
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| T |
40961997 |
atatcaacataaccagcatatt |
40962018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 40971940 - 40971900
Alignment:
| Q |
24 |
tcattcaagtgtcaactgttagaaaagccatagtaatagaa |
64 |
Q |
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| T |
40971940 |
tcattcaagtgtcaactgttagaaaagccatagtaatagaa |
40971900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 241
Target Start/End: Original strand, 30906864 - 30906981
Alignment:
| Q |
124 |
ttacctccattgagccaaagggtgagaggctttttgtgagggtcatgatcagcctcaacaaaataatagaagaggcttctcccatgccttacatctatat |
223 |
Q |
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|||||||||||||||||||| ||||| || || || ||||| | ||||||||| |||||||||||||| || | |||||| ||||| ||||||| |||| |
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| T |
30906864 |
ttacctccattgagccaaagagtgaggggtttattttgaggtttatgatcagcttcaacaaaataataaaacaagcttctaccatgttttacatcaatat |
30906963 |
T |
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| Q |
224 |
caatatagccagcatatt |
241 |
Q |
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||| ||| |||||||||| |
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| T |
30906964 |
caacataaccagcatatt |
30906981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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