View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7030_low_13 (Length: 239)
Name: NF7030_low_13
Description: NF7030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7030_low_13 |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 7554510 - 7554731
Alignment:
| Q |
18 |
catatagagtgcttcatcatcaacacttgtatacgataagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatg |
117 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7554510 |
catatagagtgcttcatcatcaacacttgtatatgataagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatg |
7554609 |
T |
|
| Q |
118 |
tcatagcaatttttcaaatcaagcagctctaaattgggaaagatggaagctaacactttgatgttttcatctcttaactgtaaactgtgacccaaacata |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7554610 |
tcatagcaatttttcaaatcaagcagctctaaattgggaaagatggaagctaagactttgatgttttcatctcttaactgtaaactgtgacccaaacata |
7554709 |
T |
|
| Q |
218 |
gagactttaagttggggcttac |
239 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
7554710 |
gagactttaagttggggcttac |
7554731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 19468398 - 19468333
Alignment:
| Q |
130 |
ttcaaatcaagcagctctaaattgggaaagatggaagctaacactttgatgttttcatctcttaac |
195 |
Q |
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| T |
19468398 |
ttcaaatcaagcagctgcaaattgggaaaaatggaagcaaacattatgatgttttcatcgcttaac |
19468333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 194
Target Start/End: Original strand, 9581193 - 9581335
Alignment:
| Q |
52 |
gataagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaat |
151 |
Q |
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|||| ||||||||||||||| | | ||||||| |||||| ||| |||||||| ||||||||||| | |||||| || ||||||||||| |||| |
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| T |
9581193 |
gatatgttcaaatgtctaatctgacaacatctttttaaaacttgacaaatacctcttttagatatgttacagcaatggcgcagatcaagcagctgcaaat |
9581292 |
T |
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| Q |
152 |
tgggaaagatggaagctaacactttgatgttttcatctcttaa |
194 |
Q |
| |
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|||| || || ||||| |||| | ||||||||| ||||||||| |
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| T |
9581293 |
tggggaaaattgaagcaaacattatgatgtttttatctcttaa |
9581335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 195
Target Start/End: Original strand, 9586761 - 9586904
Alignment:
| Q |
52 |
gataagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaat |
151 |
Q |
| |
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|||| ||||||||||||||| | | ||||||| ||||| ||| |||||||| ||||||||||| | |||||| || ||||||||||| |||| |
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| T |
9586761 |
gatatgttcaaatgtctaatctgacaacatctttgtaaaacttgacaaatacctcttttagatatgttacagcaatggcacagatcaagcagctgcaaat |
9586860 |
T |
|
| Q |
152 |
tgggaaagatggaagctaacactttgatgttttcatctcttaac |
195 |
Q |
| |
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|||| || || ||||| |||| | ||||||||| |||||||||| |
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| T |
9586861 |
tggggaaaattgaagcaaacattatgatgtttttatctcttaac |
9586904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 195
Target Start/End: Original strand, 9411482 - 9411620
Alignment:
| Q |
57 |
gttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaattggga |
156 |
Q |
| |
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||||||||||||||||||| |||||| ||||||| || ||||||||||| |||||||||| | | || ||||||||||||||| |||||||| |
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| T |
9411482 |
gttcaaatgtctaatgttaccacatctccttaaaacctgcaaaataccttcgttagatatgttacaacatccgctcaaatcaagcagctgcaaattgggg |
9411581 |
T |
|
| Q |
157 |
aagatggaagctaacactttgatgttttcatctcttaac |
195 |
Q |
| |
|
|| |||||||| ||| ||||||||||| |||||||||| |
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| T |
9411582 |
aaaatggaagcaaaccttttgatgtttttatctcttaac |
9411620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 170
Target Start/End: Original strand, 7119284 - 7119397
Alignment:
| Q |
54 |
taagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaattg |
153 |
Q |
| |
|
||||||||||||| |||| ||| |||||| ||||||| ||| |||||||||| |||||||| || |||| | ||||||||||| || | ||||||| |
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| T |
7119284 |
taagttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttc---agatatgttattgcaagtattcaaatcaagaagttgtaaattg |
7119380 |
T |
|
| Q |
154 |
ggaaagatggaagctaa |
170 |
Q |
| |
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|| || | ||||||||| |
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| T |
7119381 |
gggaaaaaggaagctaa |
7119397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 170
Target Start/End: Original strand, 7131762 - 7131875
Alignment:
| Q |
54 |
taagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaattg |
153 |
Q |
| |
|
||||||||||||| |||| ||| |||||| ||||||| ||| |||||||||| |||||||| || |||| | ||||||||||| || | ||||||| |
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| T |
7131762 |
taagttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttc---agatatgttattgcaagtattcaaatcaagaagttgtaaattg |
7131858 |
T |
|
| Q |
154 |
ggaaagatggaagctaa |
170 |
Q |
| |
|
|| || | ||||||||| |
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| T |
7131859 |
gggaaaaaggaagctaa |
7131875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 227
Target Start/End: Original strand, 19632615 - 19632733
Alignment:
| Q |
109 |
ttagatatgtcatagcaatttttcaaatcaagcagctctaaattgggaaagatggaagctaacactttgatgttttcatctcttaactgtaaactgtgac |
208 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| ||| ||||||||||| | ||||| |||| | | || |||||||| |||||| ||||| | ||| |
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|
| T |
19632615 |
ttagatatgtaatagcaacgattcaaatcaagccgctacaaattgggaaaaaacgaagcgaacattgtaatcttttcatcacttaaccgtaaatttcgac |
19632714 |
T |
|
| Q |
209 |
ccaaacatagagactttaa |
227 |
Q |
| |
|
||||| | ||||||||||| |
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|
| T |
19632715 |
ccaaatagagagactttaa |
19632733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 172
Target Start/End: Complemental strand, 10579708 - 10579593
Alignment:
| Q |
54 |
taagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaattg |
153 |
Q |
| |
|
|||||||||||| |||| ||| |||||||| | ||| |||||||||||||| |||||||| | |||| | |||||||||||||||| |||||| |
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|
| T |
10579708 |
taagttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttc---agatatgtattcgcaagtattcaaatcaagcagctgcaaattg |
10579612 |
T |
|
| Q |
154 |
ggaaagatggaagctaaca |
172 |
Q |
| |
|
|| || | ||||||||||| |
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|
| T |
10579611 |
gggaaaaaggaagctaaca |
10579593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 188
Target Start/End: Complemental strand, 41901512 - 41901376
Alignment:
| Q |
52 |
gataagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaat |
151 |
Q |
| |
|
|||||||||||||||||||||||| ||| | ||||||| |||| ||||||||||| | ||||| | | ||||| ||||||||||||||| |||| |
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|
| T |
41901512 |
gataagttcaaatgtctaatgttacaacacatccttaaaacttgaacaataccttcttcaaatatgcgacaacaattgctcaaatcaagcagctgcaaat |
41901413 |
T |
|
| Q |
152 |
tgggaaagatggaagctaacactttgatgttttcatc |
188 |
Q |
| |
|
|||| || |||||||| |||| | |||||| |||||| |
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|
| T |
41901412 |
tggggaaaatggaagcgaacattgtgatgtcttcatc |
41901376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 167
Target Start/End: Original strand, 32267597 - 32267712
Alignment:
| Q |
52 |
gataagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaat |
151 |
Q |
| |
|
|||||||||||||||||||||||| |||| | ||||||| |||| |||||||||| ||||||| | | ||||| ||||||||||||||| |||| |
|
|
| T |
32267597 |
gataagttcaaatgtctaatgttacaacatatccttaaaaattgaacgataccttcttcagatatgcgacaacaattgctcaaatcaagcagctgcaaat |
32267696 |
T |
|
| Q |
152 |
tgggaaagatggaagc |
167 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
32267697 |
tggagaagatggaagc |
32267712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 172
Target Start/End: Original strand, 1600546 - 1600664
Alignment:
| Q |
54 |
taagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaattg |
153 |
Q |
| |
|
|||||||||||||||||| ||| | |||| ||||||| ||| |||||||||||| |||||||| | |||| | ||||||||||||| | |||||| |
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|
| T |
1600546 |
taagttcaaatgtctaattttagaaaatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgcaaattg |
1600645 |
T |
|
| Q |
154 |
ggaaagatggaagctaaca |
172 |
Q |
| |
|
||||| ||||||| |||| |
|
|
| T |
1600646 |
ggaaaattggaagcaaaca |
1600664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 187
Target Start/End: Complemental strand, 8187019 - 8186930
Alignment:
| Q |
98 |
aaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaattgggaaagatggaagctaacactttgatgttttcat |
187 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||| || |||||||| || | ||||| ||||| || || |||||||| |
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|
| T |
8187019 |
aaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgcaaattggggaataaggaagataacatttcgaggttttcat |
8186930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 162
Target Start/End: Complemental strand, 34936134 - 34936027
Alignment:
| Q |
55 |
aagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaattgg |
154 |
Q |
| |
|
|||| |||||||||||||| | |||||| ||||||| ||| ||||||||| ||||||||| || ||||| ||||||||||||| | ||||||| |
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|
| T |
34936134 |
aagtacaaatgtctaatgtcacaacatctccttaaaacatgataaataccttgattagatatgccactgcaatcgctcaaatcaagcagatgcaaattgg |
34936035 |
T |
|
| Q |
155 |
gaaagatg |
162 |
Q |
| |
|
|||||||| |
|
|
| T |
34936034 |
gaaagatg |
34936027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 27922530 - 27922574
Alignment:
| Q |
18 |
catatagagtgcttcatcatcaacacttgtatacgataagttcaa |
62 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||| || |||||||| |
|
|
| T |
27922530 |
catataaagtgcttcatcatcaacatttgtatatgacaagttcaa |
27922574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 1657378 - 1657472
Alignment:
| Q |
58 |
ttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaatt |
152 |
Q |
| |
|
|||||||||||||||||| |||| | |||||| |||| ||||||||||| ||||||||| | ||||| |||||||||| |||| |||||| |
|
|
| T |
1657378 |
ttcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttcagatatgtctttgcaatggctcaaatcaagtagctgtaaatt |
1657472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 88943 - 88999
Alignment:
| Q |
54 |
taagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttcttt |
110 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |||||||| ||| |||||||||||| |
|
|
| T |
88943 |
taagttcaaatgtctaatcttacaacatctccttaaaatctgatcaataccttcttt |
88999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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