View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7030_low_14 (Length: 239)

Name: NF7030_low_14
Description: NF7030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7030_low_14
NF7030_low_14
[»] chr1 (3 HSPs)
chr1 (1-239)||(7554992-7555230)
chr1 (133-239)||(19467455-19467561)
chr1 (133-180)||(30827724-30827771)
[»] chr6 (5 HSPs)
chr6 (4-239)||(9411927-9412156)
chr6 (135-185)||(6596310-6596360)
chr6 (133-185)||(10579173-10579225)
chr6 (133-178)||(6436837-6436882)
chr6 (133-178)||(7993631-7993676)
[»] chr4 (8 HSPs)
chr4 (133-236)||(1755479-1755582)
chr4 (138-239)||(8186383-8186484)
chr4 (133-239)||(571256-571362)
chr4 (133-239)||(7225185-7225290)
chr4 (10-76)||(1481560-1481626)
chr4 (138-236)||(21833304-21833402)
chr4 (139-172)||(2373565-2373598)
chr4 (133-169)||(2621502-2621538)
[»] chr8 (2 HSPs)
chr8 (139-236)||(32151900-32151997)
chr8 (133-173)||(18314728-18314768)
[»] chr5 (2 HSPs)
chr5 (136-184)||(17205662-17205710)
chr5 (185-236)||(32268513-32268564)
[»] chr7 (1 HSPs)
chr7 (133-239)||(7977799-7977905)
[»] chr3 (2 HSPs)
chr3 (154-236)||(1657474-1657556)
chr3 (133-175)||(51763487-51763529)


Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 7554992 - 7555230
Alignment:
Q  1 acaagtgatatgtcgttgatgtagtaatgttcagagagattaatcctggtgagtttggaaagtgccaatgaaagagtctccaacccattaaggaagttac 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7554992 acaagtgatatgtcgttgatgtagtaatggtcagagagattaatcctggtgagtttggaaagtgccaatgaaagagtctccaacccattaaggaagttac 7555091  T
Q  101 tatgatccttaaatttattacggggataacccaggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7555092 tatgatccttaaatttattacggggataacccaggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatc 7555191  T
Q  201 cattttggaacaagtgagtgaggttaaagttgtaatatt 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7555192 cattttggaacaagtgagtgaggttaaagttgtaatatt 7555230  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 239
Target Start/End: Complemental strand, 19467561 - 19467455
Alignment:
Q  133 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttg 232  Q
    ||||||||||||||||||||||| |||||||| || ||||| |||| |||| || |||||| |    | || | | |||||||||| ||||| |||||||    
T  19467561 aggttgagttcttcgagcaaaggaaaacattccgcgatgaggaacaggtcagtggtattgaaatctgcaatgtcgaaacaagtgagagaggtcaaagttg 19467462  T
Q  233 taatatt 239  Q
    |||||||    
T  19467461 taatatt 19467455  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 30827724 - 30827771
Alignment:
Q  133 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaag 180  Q
    |||||||||| || ||||||||||||||| || |||||||||||||||    
T  30827724 aggttgagttgtttgagcaaagggaaacaatcggcaatgagtaacaag 30827771  T

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Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 9411927 - 9412156
Alignment:
Q  4 agtgatatgtcgttgatgtagtaatgttcagagagattaatcctggtgagtttggaaagtgccaatgaaagagtctccaacccattaaggaagttactat 103  Q
    |||||| ||||||||||||||| |||  |||||||||||||| ||||||||||| |||||| ||||||||||||||| | || |||||| |||   ||||    
T  9411927 agtgatgtgtcgttgatgtagtgatgaccagagagattaatcttggtgagtttgaaaagtgtcaatgaaagagtctctaccctattaagaaag---ctat 9412023  T
Q  104 gatccttaaatttattacggggataacccaggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccat 203  Q
    ||||||||||||||   |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9412024 gatccttaaattta---cggggataacacaggttgagttcttcaagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaacccat 9412120  T
Q  204 tttggaacaagtgagtgaggttaaagttgtaatatt 239  Q
    | | ||  |||||| |||||||||||||||||||||    
T  9412121 tcttgaggaagtgaatgaggttaaagttgtaatatt 9412156  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 6596360 - 6596310
Alignment:
Q  135 gttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcatt 185  Q
    ||||||||||| |||||| |||||||| |||||||||||||||||||||||    
T  6596360 gttgagttctttgagcaatgggaaacaatcagcaatgagtaacaagtcatt 6596310  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 10579225 - 10579173
Alignment:
Q  133 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcatt 185  Q
    ||||||||||||| |||||| |||||||| || |||| |||||||||||||||    
T  10579225 aggttgagttctttgagcaatgggaaacaatcggcaacgagtaacaagtcatt 10579173  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 6436837 - 6436882
Alignment:
Q  133 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaaca 178  Q
    |||||||||| || ||||||||||||||| || |||||||||||||    
T  6436837 aggttgagttgtttgagcaaagggaaacaatcggcaatgagtaaca 6436882  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 7993676 - 7993631
Alignment:
Q  133 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaaca 178  Q
    ||||||||||||| ||||||||||||||| |  |||||||||||||    
T  7993676 aggttgagttctttgagcaaagggaaacaattggcaatgagtaaca 7993631  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 1755479 - 1755582
Alignment:
Q  133 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttg 232  Q
    |||||||||||||| |||||||||||||| ||||||||||| || ||||||||| ||| || |  | | || |||||||| ||||| ||||| |||||||    
T  1755479 aggttgagttcttcaagcaaagggaaacagtcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagttg 1755578  T
Q  233 taat 236  Q
    ||||    
T  1755579 taat 1755582  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 239
Target Start/End: Complemental strand, 8186484 - 8186383
Alignment:
Q  138 gagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaata 237  Q
    ||||||||| || ||||| ||||| || || ||||| || | |||| ||||||||||||| || || |||||||| ||||||||||| ||||||||||||    
T  8186484 gagttcttctaggaaaggaaaacaatcggcgatgaggaagatgtcagtgctattgatagattcaatgttggaacatgtgagtgaggtcaaagttgtaata 8186385  T
Q  238 tt 239  Q
    ||    
T  8186384 tt 8186383  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 571256 - 571362
Alignment:
Q  133 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttg 232  Q
    |||| |||||||||||||||||||||||| || |  ||||| ||||||||  || || ||||||||||| | | ||||||| |||| || || |||||||    
T  571256 aggtggagttcttcgagcaaagggaaacagtccgagatgagcaacaagtcggtggtactgatagaatccttgtaggaacaattgagagatgtcaaagttg 571355  T
Q  233 taatatt 239  Q
    |||||||    
T  571356 taatatt 571362  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 239
Target Start/End: Complemental strand, 7225290 - 7225185
Alignment:
Q  133 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttg 232  Q
    |||| |||||||||||||||||||||||| || || ||||| |||| |||| ||||| ||| |||||  | | ||||||| ||||| ||||| |||||||    
T  7225290 aggtcgagttcttcgagcaaagggaaacaatccgcgatgaggaacatgtcagtgctagtgacagaat-aaatgtggaacatgtgagagaggtcaaagttg 7225192  T
Q  233 taatatt 239  Q
    |||||||    
T  7225191 taatatt 7225185  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 1481560 - 1481626
Alignment:
Q  10 atgtcgttgatgtagtaatgttcagagagattaatcctggtgagtttggaaagtgccaatgaaagag 76  Q
    |||||||||| ||||||||| ||||||||||||| | ||  ||||||| | ||||||||||||||||    
T  1481560 atgtcgttgacgtagtaatgatcagagagattaagcttgcggagtttgaagagtgccaatgaaagag 1481626  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 21833402 - 21833304
Alignment:
Q  138 gagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaat 236  Q
    |||||||||| |||| |||||||||||  | ||||| |||| |||| || |||||| |  | | ||||||||||||||||| ||||| ||||| |||||    
T  21833402 gagttcttcgtgcaaggggaaacattcgacgatgaggaacaggtcagtggtattgaaattagcaattttggaacaagtgagagaggtcaaagtagtaat 21833304  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 2373598 - 2373565
Alignment:
Q  139 agttcttcgagcaaagggaaacattcagcaatga 172  Q
    ||||||||||||||||||||||| ||||||||||    
T  2373598 agttcttcgagcaaagggaaacaatcagcaatga 2373565  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 2621538 - 2621502
Alignment:
Q  133 aggttgagttcttcgagcaaagggaaacattcagcaa 169  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  2621538 aggttgagttcttcgagtaaagggaaacaatcagcaa 2621502  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 236
Target Start/End: Original strand, 32151900 - 32151997
Alignment:
Q  139 agttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaat 236  Q
    ||||||||||||||||||||||| || |||||||| ||||||||  ||| ||||| |||||  ||    ||||||||||| ||||| |||||||||||    
T  32151900 agttcttcgagcaaagggaaacaatcggcaatgaggaacaagtcggtgccattgaaagaataaatacgagaacaagtgagagaggtcaaagttgtaat 32151997  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 18314768 - 18314728
Alignment:
Q  133 aggttgagttcttcgagcaaagggaaacattcagcaatgag 173  Q
    |||| |||||||||||||||||||||||| |||||||||||    
T  18314768 aggtcgagttcttcgagcaaagggaaacaatcagcaatgag 18314728  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 17205662 - 17205710
Alignment:
Q  136 ttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcat 184  Q
    |||||||||| ||||||||||||||| || ||||||||||||| |||||    
T  17205662 ttgagttctttgagcaaagggaaacaatcggcaatgagtaacaggtcat 17205710  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 32268513 - 32268564
Alignment:
Q  185 tgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaat 236  Q
    ||||||||||| | | |||||||||||||||||| ||||| |||||||||||    
T  32268513 tgctattgatatattgcattttggaacaagtgagagaggtcaaagttgtaat 32268564  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 7977799 - 7977905
Alignment:
Q  133 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttg 232  Q
    |||| ||||||||| |||||||||||||| || || ||||| |||| ||  ||| |||| ||||| || || || |||||  |||||||||| |||||||    
T  7977799 aggtcgagttcttcaagcaaagggaaacaatctgctatgagaaacatgtggttgatattaatagattcaatgttagaacatttgagtgaggtcaaagttg 7977898  T
Q  233 taatatt 239  Q
     ||||||    
T  7977899 caatatt 7977905  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 1657474 - 1657556
Alignment:
Q  154 gggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaat 236  Q
    |||||||| ||||||||||| |||| |||| ||| ||||||||| || ||   |||||| ||||| |||||||||||| ||||    
T  1657474 gggaaacaatcagcaatgaggaacaggtcagtgcgattgatagattcaatgaaggaacacgtgagagaggttaaagttttaat 1657556  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 175
Target Start/End: Complemental strand, 51763529 - 51763487
Alignment:
Q  133 aggttgagttcttcgagcaaagggaaacattcagcaatgagta 175  Q
    |||| ||||||||||||||| ||||||||||| ||||||||||    
T  51763529 aggtcgagttcttcgagcaatgggaaacattccgcaatgagta 51763487  T

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