View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7030_low_15 (Length: 222)
Name: NF7030_low_15
Description: NF7030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7030_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 39026735 - 39026945
Alignment:
| Q |
1 |
aaaaaaggaaggccgaggaagcagcagctaaagctaataatcacgaacaaacagttgaaggaggaaaccaagttgtaaacgacttagttaaaaattccca |
100 |
Q |
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| T |
39026735 |
aaaaaaggaaggccgaggaagcagcagctaaagctaataatcacgaacaaacagttgaaggaggaaaccaagttgtaaacgacttagttaaaaattccca |
39026834 |
T |
|
| Q |
101 |
atctgtggctgatgatactgatccatctatatctggagtaataaatggtaatggtaaggacttggagggaaatcagaattctacatctacatctgatact |
200 |
Q |
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| T |
39026835 |
atctgtggctgatgatactgatccatctatatctggagtaataaatggtaatggtaaggacttggagggaaatcagaattctacatctacatctgatact |
39026934 |
T |
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| Q |
201 |
gcaaatgatga |
211 |
Q |
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||||||||||| |
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| T |
39026935 |
gcaaatgatga |
39026945 |
T |
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Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 18184913 - 18184965
Alignment:
| Q |
77 |
aaacgacttagttaaaaattcccaatctgtggctgatgatactgatccatcta |
129 |
Q |
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| T |
18184913 |
aaacgacttagttaaaaattcccaatctgtggctaatgatactgatccatcta |
18184965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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