View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7030_low_3 (Length: 459)
Name: NF7030_low_3
Description: NF7030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7030_low_3 |
 | |
|
| [»] scaffold1439 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 34989497 - 34989942
Alignment:
| Q |
1 |
aagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
34989497 |
aagtacttgcagaaaaagaggtatgtttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgttgtgagtgataataaaaatg |
34989596 |
T |
|
| Q |
101 |
gtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaaga |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34989597 |
gtagtaagatatttattaccacaagaaataaggatgttgccatgtattgtaagaaatcttcatttattgaagtgcatgaactacaaccattaactgaaga |
34989696 |
T |
|
| Q |
201 |
acaatcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
34989697 |
acaatcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctaggaag |
34989796 |
T |
|
| Q |
301 |
tgcaagggcttaccactagcaattgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34989797 |
tgcaagggcttaccactagcaattgtgactattggtggtcttttatctacaaaggggagaaatgcatttgaatggcagagatttagtgaaaatatgactg |
34989896 |
T |
|
| Q |
401 |
tagagctaaggaatgattcccatttgaccagaataaaaaagatttt |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34989897 |
tagagctaaggaatgattcccatttgaccagaataaaaaagatttt |
34989942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 2305671 - 2305226
Alignment:
| Q |
1 |
aagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatg |
100 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||| |
|
|
| T |
2305671 |
aagtacttgcagaataagaggtatgtttttgtgtttgataatgtatggaacacaagtttttgggatgagattgaatatgctatgagtgatcataaaaatg |
2305572 |
T |
|
| Q |
101 |
gtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaaga |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||| |||||| |||||||||||||||||| ||||||||| || |
|
|
| T |
2305571 |
gtagtaagatatttattaccacaagaaatatggatgttgccatatattgtaagaaatcttcttttattcaagtgcatgaactacaacttttaactgagga |
2305472 |
T |
|
| Q |
201 |
acaatcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaag |
300 |
Q |
| |
|
| ||| | |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| ||| |
|
|
| T |
2305471 |
aaaataatttgatttgtttaataagaaggcatttcaatttgactttgaaggatgttgtccaaaagagctcattgatatatcttttgaaatcgctaggaag |
2305372 |
T |
|
| Q |
301 |
tgcaagggcttaccactagcaattgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactt |
400 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2305371 |
tgcaagggcttacccctagcaattgtaactattggtggtcttttatctacaaaggagaaaaatgcatttgaatggcagagatttagtgaaaatatgactt |
2305272 |
T |
|
| Q |
401 |
tagagctaaggaatgattcccatttgaccagaataaaaaagatttt |
446 |
Q |
| |
|
||||| ||| ||||||||||||||||||| | |||||||||||||| |
|
|
| T |
2305271 |
tagagttaaagaatgattcccatttgaccgggataaaaaagatttt |
2305226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 34975662 - 34975772
Alignment:
| Q |
1 |
aagtacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
34975662 |
aagtacttgcagaaaaagaggtatgtttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgttgtgagtgataataaaaatg |
34975761 |
T |
|
| Q |
101 |
gtagtaagata |
111 |
Q |
| |
|
||||||||||| |
|
|
| T |
34975762 |
gtagtaagata |
34975772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 34980445 - 34980551
Alignment:
| Q |
4 |
tacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggta |
103 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
34980445 |
tacttgcagaaaaagaggtatgtttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgttgtgagtgataataaaaatggta |
34980544 |
T |
|
| Q |
104 |
gtaagat |
110 |
Q |
| |
|
||||||| |
|
|
| T |
34980545 |
gtaagat |
34980551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 320 - 446
Target Start/End: Original strand, 34975970 - 34976096
Alignment:
| Q |
320 |
caattgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaaggaatgattc |
419 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
34975970 |
caattgtaactattgggggtcttttatctacaaaggagaaaaatgtatttgaatgacagagatttagtgaaaatatgacttttgagctaaagaatgattc |
34976069 |
T |
|
| Q |
420 |
ccatttgaccagaataaaaaagatttt |
446 |
Q |
| |
|
||||||||| | |||||||||||||| |
|
|
| T |
34976070 |
tcatttgaccgggataaaaaagatttt |
34976096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 320 - 446
Target Start/End: Original strand, 34983081 - 34983207
Alignment:
| Q |
320 |
caattgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaaggaatgattc |
419 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
34983081 |
caattgtaactattgggggtcttttatctacaaaggagaaaaatgtatttgaatgacagagatttagtgaaaatatgacttttgagctaaagaatgattc |
34983180 |
T |
|
| Q |
420 |
ccatttgaccagaataaaaaagatttt |
446 |
Q |
| |
|
||||||||| | |||||||||||||| |
|
|
| T |
34983181 |
tcatttgaccgggataaaaaagatttt |
34983207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 25)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 4 - 440
Target Start/End: Complemental strand, 22657249 - 22656813
Alignment:
| Q |
4 |
tacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggta |
103 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| |||||||||| | |
|
|
| T |
22657249 |
tacttgcagaaaaagaggtatgtttttgtgtttgatgatgtatggaacaaaagtttttgggatgagattgaatatgctgttggtgatcataaaaatggga |
22657150 |
T |
|
| Q |
104 |
gtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaaca |
203 |
Q |
| |
|
|||||||||||||||| | |||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||| | |||||| |
|
|
| T |
22657149 |
gtaagatatttattacaacaagaaatatggatgttgcggtgtattgtaagaaatcttcttttattgaagtgcatgaactacatcctttaacagtagaaca |
22657050 |
T |
|
| Q |
204 |
atcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgc |
303 |
Q |
| |
|
||| |||| ||||| ||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||| ||| |||||||||||||| ||| |
|
|
| T |
22657049 |
atcttttgagttgtttaataagaaggcctttcaatttgactttaatggatgttgtccaaaagagctcattgatatatcttccgaaattgctagaaaatgc |
22656950 |
T |
|
| Q |
304 |
aagggcttaccactagcaattgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactttag |
403 |
Q |
| |
|
|| || ||||| || ||||||||| ||||||| || ||||||||||||||||||| |||||||||||||||||| |||| || ||||||||| ||||||| |
|
|
| T |
22656949 |
aaaggtttaccgctggcaattgtggctattggcggccttttatctacaaaggagaaaaatgcatttgaatggcaaagatttaatgaaaatataactttag |
22656850 |
T |
|
| Q |
404 |
agctaaggaatgattcccatttgaccagaataaaaaa |
440 |
Q |
| |
|
|| ||| |||||||||||||| ||| | |||||||| |
|
|
| T |
22656849 |
agttaaataatgattcccatttaaccgggataaaaaa |
22656813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 5 - 401
Target Start/End: Complemental strand, 22621096 - 22620700
Alignment:
| Q |
5 |
acttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtag |
104 |
Q |
| |
|
||||||| ||||||||||| ||||||| |||||||||||||||| || | ||||||| |||| || || ||| ||||| |||| |||||||||| || |
|
|
| T |
22621096 |
acttgcaacaaaagaggtatgtttttgtatttgatgatgtatggaccatagatttttggaatgaaatagagcatgttgtgattgataataaaaatgggag |
22620997 |
T |
|
| Q |
105 |
taagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaa |
204 |
Q |
| |
|
||||||||| ||||| | ||||| || ||||||||| || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
22620996 |
taagatattgattacaacaagaagtatggatgttgctatttattgtaaaaaatcttcttttattgaggtgcatgaactacaacctttaactgaggaacaa |
22620897 |
T |
|
| Q |
205 |
tcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgca |
304 |
Q |
| |
|
|| |||| |||||||||||||||| ||||| ||||||||| || ||| ||||||||||||| || ||||||||| ||| |||||||||||||| |||| |
|
|
| T |
22620896 |
tcttttgagttgttcaataagaaggtatttcgatttgactttgatggaagttgtccaaaagatctaattgatatatcttccgaaattgctagaaaatgca |
22620797 |
T |
|
| Q |
305 |
agggcttaccactagcaattgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgacttt |
401 |
Q |
| |
|
|||| ||||||||||||||||| | ||||||||||||||||||||||| || |||||||||||| |||| ||||| || ||||||||||||||| |
|
|
| T |
22620796 |
agggtttaccactagcaattgtagccgttggtggtcttttatctacaaagttgaaaaatgcatttgattggcggagatttaatgaaaatatgacttt |
22620700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 59 - 419
Target Start/End: Complemental strand, 22648312 - 22647952
Alignment:
| Q |
59 |
tttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatc |
158 |
Q |
| |
|
||||||||||||||||| ||| ||| |||| |||||||||| ||||||||||||||||| | |||||||| |||||||||||| |||||||||||||| |
|
|
| T |
22648312 |
tttgggatgagattgaaaatgcattgattgataataaaaatgggagtaagatatttattacaacaagaaatatggatgttgccatatattgtaagaaatc |
22648213 |
T |
|
| Q |
159 |
ttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgttgt |
258 |
Q |
| |
|
||| || ||||||||| ||||| | ||||||||||| | |||||||| |||| |||||||| |||||| ||||||| |||||| | ||||||||| |
|
|
| T |
22648212 |
ttctttcattgaagtgtatgaattgcaacctttaacaaatgaacaatcttttgagttgttcaacaagaagacatttcagtttgacaacaatggatgttgt |
22648113 |
T |
|
| Q |
259 |
ccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttatctacaaaggaga |
358 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||| ||||||| |||||||| ||||| || |||||||| | ||||||||||| || |||||||| |||| |
|
|
| T |
22648112 |
ccaaaagaactcattgatatatcttttgaaatttctagaaaatgcaagggtttaccgctggcaattgttgccattggtggtctattgtctacaaaagaga |
22648013 |
T |
|
| Q |
359 |
gaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaaggaatgattc |
419 |
Q |
| |
|
||||| |||||| ||||||| || | || ||||||||||||||||||||| ||| ||||| |
|
|
| T |
22648012 |
aaaatgtatttgagtggcagaaattttgtaaaaatatgactttagagctaaagaaagattc |
22647952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 4 - 348
Target Start/End: Complemental strand, 22615451 - 22615110
Alignment:
| Q |
4 |
tacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggta |
103 |
Q |
| |
|
||||||||| |||||||||| || |||||||||||||||||||||||| ||||||| |||||||||||| || ||| | |||| |||||||||| | |
|
|
| T |
22615451 |
tacttgcagcaaaagaggtacgttgttgtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaa |
22615352 |
T |
|
| Q |
104 |
gtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaaca |
203 |
Q |
| |
|
||||||||||||| || | ||| |||| |||||||| | | |||||||| ||||||||| | |||||||||| | |||||||||||||||||||| |
|
|
| T |
22615351 |
gtaagatatttataacaacaaggaatatagatgttgcactttcttgtaagagatcttcgttagtcaaagtgcatgagttgcaacctttaactgaagaaca |
22615252 |
T |
|
| Q |
204 |
atcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgc |
303 |
Q |
| |
|
||| | || ||||| |||||||||||||||||||||||| || | ||||||||||||||||||||||||||| ||| ||| |||| || ||| ||| |
|
|
| T |
22615251 |
atctctggagttgtttaataagaaggcatttcaatttgac---aaatgttgttgtccaaaagagctcattgatatatcttatgatattgttaaaaaatgc |
22615155 |
T |
|
| Q |
304 |
aagggcttaccactagcaattgtgactattggtggtcttttatct |
348 |
Q |
| |
|
|| || ||||||||||||||||| | || || |||||||||||| |
|
|
| T |
22615154 |
aaaggtttaccactagcaattgttgccatcggaggtcttttatct |
22615110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 57 - 409
Target Start/End: Original strand, 22034853 - 22035205
Alignment:
| Q |
57 |
tttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaa |
156 |
Q |
| |
|
|||||||||||| ||||||| | ||| | |||| ||||||||| |||||||||||||| || | |||||| | |||||||| ||| |||||| ||| |
|
|
| T |
22034853 |
tttttgggatgatattgaattttctgtaattgatagtaaaaatggaagtaagatatttataacaacaagaaacatggatgttgtgttgtcttgtaaaaaa |
22034952 |
T |
|
| Q |
157 |
tcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgtt |
256 |
Q |
| |
|
||||| || ||||| |||| ||| || |||||||||||| ||||||||||| | | |||||||||||||||||||| ||||||||| | ||| | || |
|
|
| T |
22034953 |
tcttctttcattgaggtgcttgagctgcaacctttaactcaagaacaatcattgaagttgttcaataagaaggcattcaaatttgactacggagggtctt |
22035052 |
T |
|
| Q |
257 |
gtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttatctacaaagga |
356 |
Q |
| |
|
|||| ||||||||||||| ||||||| |||||||| || |||||| ||||| || |||||||||||||| |||||||||| ||||||||||||| || |
|
|
| T |
22035053 |
gtcccaaagagctcattggtatagctaatgaaattgttaaaaagtgaaagggtttgccactagcaattgttgctattggtggacttttatctacaagaga |
22035152 |
T |
|
| Q |
357 |
gagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaa |
409 |
Q |
| |
|
|| ||||| ||||| |||||||||| ||| |||||| | | ||||||||||| |
|
|
| T |
22035153 |
gaaaaatgtgtttgagtggcagagatttagagaaaatttaaatttagagctaa |
22035205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 4 - 393
Target Start/End: Original strand, 22115368 - 22115757
Alignment:
| Q |
4 |
tacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggta |
103 |
Q |
| |
|
|||||||||||||||||||| || | |||||||||||||| ||||| | |||||||||||| ||||||| | ||| | |||| ||||||||| | |
|
|
| T |
22115368 |
tacttgcagaaaaagaggtacgttgtcgtgtttgatgatgtttggaatgtacatttttgggatgatattgaattttctgtaattgatagtaaaaatggaa |
22115467 |
T |
|
| Q |
104 |
gtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaaca |
203 |
Q |
| |
|
||||||||||||| || | |||||| | |||||||| ||| |||||| |||||||| || ||||| |||| | | || |||||||||||| ||||||| |
|
|
| T |
22115468 |
gtaagatatttataacaacaagaaacatggatgttgtgttgtcttgtaaaaaatcttctttcattgaggtgctttagctgcaacctttaactcaagaaca |
22115567 |
T |
|
| Q |
204 |
atcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgc |
303 |
Q |
| |
|
|||| | | |||||||||||||||||||| ||||||||| | ||| | |||||| ||||||||||||| ||||||| |||||||| || ||| ||| |
|
|
| T |
22115568 |
atcattgaagttgttcaataagaaggcattcaaatttgactacggagggtcttgtcccaaagagctcattggtatagctaatgaaattgttaaaaaatgc |
22115667 |
T |
|
| Q |
304 |
aagggcttaccactagcaattgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaat |
393 |
Q |
| |
|
||||| ||||| ||||||||||| | || ||||| ||||||||||||| |||| ||||| ||||| |||||||||| ||| |||||| |
|
|
| T |
22115668 |
aagggtttaccgctagcaattgttgccatcggtggacttttatctacaagagagaaaaatgtgtttgagtggcagagatttagagaaaat |
22115757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 6 - 409
Target Start/End: Original strand, 21930706 - 21931109
Alignment:
| Q |
6 |
cttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagt |
105 |
Q |
| |
|
||||||||||||||||||| || | |||||||||||||| ||||| | |||||||||||| ||||||| || || | |||| ||||||||| ||| |
|
|
| T |
21930706 |
cttgcagaaaaagaggtatgttgtcgtgtttgatgatgtttggaatgtacatttttgggatgatattgaatttgctgcaattgatagtaaaaatggaagt |
21930805 |
T |
|
| Q |
106 |
aagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaat |
205 |
Q |
| |
|
||||||||||| || | ||| || | |||||||| ||| |||||| |||||||| || |||||| ||| ||| | |||||||||||| | ||||||| |
|
|
| T |
21930806 |
aagatatttataacaacaaggaacatggatgttgtggtgtcttgtaaaaaatcttctttcattgaaatgcttgagttgcaacctttaactcatgaacaat |
21930905 |
T |
|
| Q |
206 |
caattgatttgttcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaa |
305 |
Q |
| |
|
| | || |||||||||||||||||||| ||||||||| || || |||||||||| ||||||||||| || | || |||||||| || ||| ||||| |
|
|
| T |
21930906 |
ctttggagttgttcaataagaaggcattcaaatttgactatgatgggtgttgtccaacagagctcattggtacaactaatgaaattgttaaaaaatgcaa |
21931005 |
T |
|
| Q |
306 |
gggcttaccactagcaattgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagag |
405 |
Q |
| |
|
|| ||||| ||||||||||| | || ||||| ||||||||||||| |||| ||||| ||||| |||||| ||| ||| |||||| | | ||||||| |
|
|
| T |
21931006 |
tggtttaccgctagcaattgttgccatcggtggacttttatctacaagagagaaaaatgtgtttgagtggcagcgatttagagaaaatctaaatttagag |
21931105 |
T |
|
| Q |
406 |
ctaa |
409 |
Q |
| |
|
|||| |
|
|
| T |
21931106 |
ctaa |
21931109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 57 - 409
Target Start/End: Complemental strand, 30989435 - 30989083
Alignment:
| Q |
57 |
tttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaa |
156 |
Q |
| |
|
|||||||||||| ||||||| || ||| | |||| |||||||||| |||||||||||||| || | |||||| ||||||| ||| |||||| ||| |
|
|
| T |
30989435 |
tttttgggatgatattgaatttgctgtaattgataataaaaatggaagtaagatatttatcacaacaagaaacctagatgttgtgttgtcttgtaaaaaa |
30989336 |
T |
|
| Q |
157 |
tcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgtt |
256 |
Q |
| |
|
||||| | ||||||||||| ||| | |||||||||| |||| ||||||| | || |||||||||||||||||||| ||||||| | || |||| |
|
|
| T |
30989335 |
tcttcttatattgaagtgcttgagttgcaacctttaaatgaacaacaatctttggagttgttcaataagaaggcattcagatttgaccatggtggttgtt |
30989236 |
T |
|
| Q |
257 |
gtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttatctacaaagga |
356 |
Q |
| |
|
||||||| |||||||||| |||||||| |||||||| || ||| || || || ||||| ||||||||||| | ||||| || ||||| ||| |||| || |
|
|
| T |
30989235 |
gtccaaaggagctcattggtatagcttatgaaattgttaaaaaatgtaacggtttaccgctagcaattgttgccattggaggacttttgtctgcaaaaga |
30989136 |
T |
|
| Q |
357 |
gagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaa |
409 |
Q |
| |
|
|| ||||| ||||| ||||| |||| |||||| ||| | | ||||||||||| |
|
|
| T |
30989135 |
gaaaaatgtgtttgagtggcaaagatttagtgagaatctaagtttagagctaa |
30989083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 93 - 409
Target Start/End: Original strand, 22187360 - 22187676
Alignment:
| Q |
93 |
taaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaaccttta |
192 |
Q |
| |
|
||||||||| |||| ||||||||| || | ||| || ||| |||||| ||| |||||| | ||||| |||||||| ||||||||||| ||||||||| |
|
|
| T |
22187360 |
taaaaatggaagtaggatatttataacaacaaggaaaaagaatgttgtggtgtcttgtaaagagtcttcttttattgaggtgcatgaactgcaaccttta |
22187459 |
T |
|
| Q |
193 |
actgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattg |
292 |
Q |
| |
|
|| ||||||||| | || |||||||||||||||||||| || |||| | || || ||||||||||| |||||||||| ||||||| |||||||| |
|
|
| T |
22187460 |
tctctagaacaatctttggagttgttcaataagaaggcattcaaaattgattgtgatgggtgttgtccaaacgagctcattggtatagctgatgaaattg |
22187559 |
T |
|
| Q |
293 |
ctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaa |
392 |
Q |
| |
|
|| ||| |||| || ||||| ||||||||||| | || ||||| ||||||||||||| |||| ||||| ||||| |||||||||| ||| ||| | |
|
|
| T |
22187560 |
ttaaaaaatgcagtggtttaccgctagcaattgttgccatcggtggccttttatctacaagagagaaaaatgtgtttgagtggcagagatttagagaaca |
22187659 |
T |
|
| Q |
393 |
tatgactttagagctaa |
409 |
Q |
| |
|
| ||| || |||||||| |
|
|
| T |
22187660 |
tctgaattcagagctaa |
22187676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 93 - 409
Target Start/End: Original strand, 22028372 - 22028688
Alignment:
| Q |
93 |
taaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaaccttta |
192 |
Q |
| |
|
||||||||| |||| ||||||||| || | ||| || ||| |||||| ||| |||||| | ||||| |||||||| ||||||||||| ||||||||| |
|
|
| T |
22028372 |
taaaaatggaagtaggatatttataacaacaaggaaaaagaatgttgtggtgtcttgtaaagagtcttcttttattgaggtgcatgaactgcaaccttta |
22028471 |
T |
|
| Q |
193 |
actgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattg |
292 |
Q |
| |
|
|| ||||||||| | || |||||||||||||| |||| || |||| | || || ||||||||||| |||||||||| ||||||| |||||||| |
|
|
| T |
22028472 |
tctctagaacaatctttggagttgttcaataagaattcattcaaaattgattgtgatgggtgttgtccaaacgagctcattggtatagctgatgaaattg |
22028571 |
T |
|
| Q |
293 |
ctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaa |
392 |
Q |
| |
|
|| ||| |||| || ||||| ||||||||||| | || ||||| ||||||||||||| |||| ||||| ||||| ||||||| || ||| ||| | |
|
|
| T |
22028572 |
ttaaaaaatgcagtggtttaccgctagcaattgttgccatcggtggccttttatctacaagagagaaaaatgtgtttgagtggcagatatttagagaaca |
22028671 |
T |
|
| Q |
393 |
tatgactttagagctaa |
409 |
Q |
| |
|
| ||| || |||||||| |
|
|
| T |
22028672 |
tctgaattcagagctaa |
22028688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 4 - 326
Target Start/End: Complemental strand, 22358185 - 22357866
Alignment:
| Q |
4 |
tacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggta |
103 |
Q |
| |
|
|||||||| |||| |||||| || | |||||||||||||||||| | || ||||| | |||| ||||||| || | ||| |||| | ||||| ||| |
|
|
| T |
22358185 |
tacttgcaagaaaaaaggtatgttgtagtgtttgatgatgtatgggagtcacattttttgcatgatattgaatttgctatgattgataacaaaaagggtt |
22358086 |
T |
|
| Q |
104 |
gtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaaca |
203 |
Q |
| |
|
|| |||||| || || | |||||| | ||||||||| | ||||||||||||||| ||| |||||||| |||||||| || ||| |||| |||||| |
|
|
| T |
22358085 |
ctaggatattaatcactacaagaaacatggatgttgcgaatacttgtaagaaatcttcttttgttgaagtgtatgaactaaaaggtttgactgtagaaca |
22357986 |
T |
|
| Q |
204 |
atcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgc |
303 |
Q |
| |
|
||| |||| |||||||||||||||||||| || |||||| | ||| |||||||| || | || ||||||||| ||| |||||| || ||| ||| |
|
|
| T |
22357985 |
atcttttgagttgttcaataagaaggcattcca---tgacttaaatggacgttgtccagaaaatcttattgatatatcttccaaaattgttaaaaaatgc |
22357889 |
T |
|
| Q |
304 |
aagggcttaccactagcaattgt |
326 |
Q |
| |
|
|| || ||||||||||||||||| |
|
|
| T |
22357888 |
aaaggattaccactagcaattgt |
22357866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 147 - 393
Target Start/End: Original strand, 21937579 - 21937825
Alignment:
| Q |
147 |
ttgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttg |
246 |
Q |
| |
|
|||||| |||||||| || |||||||| | ||| | ||| ||||||| | |||||||| | || |||||||||||||||||||| ||||||||| |
|
|
| T |
21937579 |
ttgtaaaaaatcttctttcattgaagttcttgagttgcaatgtttaactcatgaacaatctttggagttgttcaataagaaggcattcaaatttgactat |
21937678 |
T |
|
| Q |
247 |
gaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttat |
346 |
Q |
| |
|
|| || ||||||||||||||||| | || |||| || |||||||| | ||| ||||| || ||||| ||||||||||| | || ||||| ||||||| |
|
|
| T |
21937679 |
gatgggtgttgtccaaaagagctaaatggtatatctaatgaaattgtaaaaaaatgcaatggtttaccgctagcaattgttgccatcggtggccttttat |
21937778 |
T |
|
| Q |
347 |
ctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaat |
393 |
Q |
| |
|
|||||| |||| ||||| ||||| ||| |||||| ||| |||||| |
|
|
| T |
21937779 |
ctacaagagagaaaaatgtgtttgagtggaagagatttagagaaaat |
21937825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 93 - 352
Target Start/End: Original strand, 22179789 - 22180048
Alignment:
| Q |
93 |
taaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaaccttta |
192 |
Q |
| |
|
||||||||| ||||||||||| || || | ||| || | ||||||||| ||| ||||| |||||||| || ||||| |||| ||| | ||| ||||| |
|
|
| T |
22179789 |
taaaaatggaagtaagatattaataacaacaaggaacatggatgttgcggtgtcctgtaaaaaatcttctttcattgaggtgcttgagttgcaaacttta |
22179888 |
T |
|
| Q |
193 |
actgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattg |
292 |
Q |
| |
|
||| ||||| || | || |||||||||||||||||||| |||||||| || || |||| || ||||||| |||||| ||||||| |||||||| |
|
|
| T |
22179889 |
actcctgaacagtctttggagttgttcaataagaaggcattcaaatttgacaatgacgggtgttttcaaaaagaggtcattggtatagctaatgaaattg |
22179988 |
T |
|
| Q |
293 |
ctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttatctacaa |
352 |
Q |
| |
|
|| ||| ||||| || ||||| ||||||||||| | || ||||| ||||||||||||| |
|
|
| T |
22179989 |
ttaaaaaatgcaatggtttaccgctagcaattgttgccatcggtggacttttatctacaa |
22180048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 31 - 227
Target Start/End: Complemental strand, 22431329 - 22431133
Alignment:
| Q |
31 |
gtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaata |
130 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||| |||| ||||||| || | ||| |||| | ||||||||| |||||||||| || || | |||||| | |
|
|
| T |
22431329 |
gtgtttgatgatgtatgggagtcaaatttttggtatgatattgaatttgctatgattgataacaaaaatggttgtaagatattaatcacaacaagaaaca |
22431230 |
T |
|
| Q |
131 |
aggatgttg-ccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaa |
227 |
Q |
| |
|
|||||| || ||| ||||||||||||||| ||| |||||||||||||||| || |||||| |||||| |||| | || |||||||||||||| |
|
|
| T |
22431229 |
aggatggtgtagatg-cttgtaagaaatcttcttttgttgaagtgcatgaacttaaaggtttaaccgaagaaaaatctttagaattgttcaataagaa |
22431133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 230
Target Start/End: Complemental strand, 22368083 - 22367884
Alignment:
| Q |
31 |
gtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaata |
130 |
Q |
| |
|
|||||||||||||||||| || || ||||||| |||| ||||||| | | ||| |||| | ||||||||| |||||||||| || || | |||||| |
|
|
| T |
22368083 |
gtgtttgatgatgtatgggactcacatttttggaatgatattgaattttctatgattgataacaaaaatggttgtaagatattaatcacaacaagaaacg |
22367984 |
T |
|
| Q |
131 |
aggatgttgcc-atgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaagg |
229 |
Q |
| |
|
|||||||||| ||| ||||||||||||||| ||| ||||||||||| |||| || ||||| ||||||| |||| | || |||||||||||||||| |
|
|
| T |
22367983 |
aggatgttgcagatgc-ttgtaagaaatcttcttttgttgaagtgcataaacttgaaggtttaagtgaagaaaaatctttagaattgttcaataagaagg |
22367885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 218 - 409
Target Start/End: Original strand, 22105205 - 22105396
Alignment:
| Q |
218 |
tcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccact |
317 |
Q |
| |
|
|||||||||||| ||| ||||||| | || || |||||||||||||||||||||| ||||||| ||| |||| || ||| ||||| || ||||| || |
|
|
| T |
22105205 |
tcaataagaaggtattcaaatttgattgtgatgggtgttgtccaaaagagctcattggtatagctaatgacattgttaaaaaatgcaatggtttaccgct |
22105304 |
T |
|
| Q |
318 |
agcaattgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaa |
409 |
Q |
| |
|
||||||||| | || ||||| ||||||||||||| |||| | || ||||| |||||||||| ||| ||| || ||| || |||||||| |
|
|
| T |
22105305 |
agcaattgttgccataggtggccttttatctacaatagagaatagtgtgtttgagtggcagagatttagagaacatctgaattcagagctaa |
22105396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 348
Target Start/End: Complemental strand, 22436671 - 22436476
Alignment:
| Q |
150 |
taagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttggaa |
249 |
Q |
| |
|
||||| |||||| ||| ||||||| |||||||| ||| ||||||||||||| |||| | || |||||||||||||||||||| || | ||||| |
|
|
| T |
22436671 |
taagagatcttcttttgttgaagtacatgaacttcaaggtttaactgaagaaaaatctttagaattgttcaataagaaggcattcca---taacttgagt |
22436575 |
T |
|
| Q |
250 |
ggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttatct |
348 |
Q |
| |
|
|||||||||||| || | || ||||||||| ||| |||||| || ||| ||||| || ||||| ||||||||||| | |||||||||||||||| |
|
|
| T |
22436574 |
ggatgttgtccacaaaatcttattgatatatcttccaaaattgttaaaaaatgcaaaggattacctctagcaattgtagtcactggtggtcttttatct |
22436476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 348
Target Start/End: Complemental strand, 22458672 - 22458331
Alignment:
| Q |
4 |
tacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggta |
103 |
Q |
| |
|
||||||||| |||| |||||| || | || |||||||||||||||| | | |||||||||||| || ||| || | ||| |||| ||||||| ||| |
|
|
| T |
22458672 |
tacttgcaggaaaaaaggtatgttatagtttttgatgatgtatggagcttacatttttgggatgatatcaaatttgctatgattgataataaaaagggtt |
22458573 |
T |
|
| Q |
104 |
gtaagatatttattaccagaagaaataaggatgttgc-catgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaac |
202 |
Q |
| |
|
|||||||||| || || | |||||| | ||||||||| ||| | |||||||||||||| ||| |||||||| ||||| | || ||| ||||| ||| |
|
|
| T |
22458572 |
gtaagatattaatcacaacaagaaacatggatgttgcaaatgca-tgtaagaaatcttcttttgttgaagtgtatgaaatgaaaggtttggctgaacaac |
22458474 |
T |
|
| Q |
203 |
aatcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtg |
302 |
Q |
| |
|
|||| | || ||||||||||||||| |||| || ||||| | ||| |||||||| || | || ||||||||| ||||| |||||| | ||| || |
|
|
| T |
22458473 |
aatctttggagttgttcaataagaagacattcca---cgacttaaacggacgttgtccagaaaatcttattgatatatcttttaaaattgttgaaaaatg |
22458377 |
T |
|
| Q |
303 |
caagggcttaccactagcaattgtgact-attggtggtcttttatct |
348 |
Q |
| |
|
||| || || |||||||||||||| ||| ||||||||| |||||||| |
|
|
| T |
22458376 |
caatggattgccactagcaattgt-actcattggtggtattttatct |
22458331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 348
Target Start/End: Complemental strand, 22481653 - 22481312
Alignment:
| Q |
4 |
tacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggta |
103 |
Q |
| |
|
||||||||| |||| |||||| || | || |||||||||||||||| | | |||||||||||| || ||| || | ||| |||| ||||||| ||| |
|
|
| T |
22481653 |
tacttgcaggaaaaaaggtatgttatagtttttgatgatgtatggagcttacatttttgggatgatatcaaatttgctatgattgataataaaaagggtt |
22481554 |
T |
|
| Q |
104 |
gtaagatatttattaccagaagaaataaggatgttgc-catgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaac |
202 |
Q |
| |
|
|||||||||| || || | |||||| | ||||||||| ||| | |||||||||||||| ||| |||||||| ||||| | || ||| ||||| ||| |
|
|
| T |
22481553 |
gtaagatattaatcacaacaagaaacatggatgttgcaaatgca-tgtaagaaatcttcttttgttgaagtgtatgaaatgaaaggtttggctgaacaac |
22481455 |
T |
|
| Q |
203 |
aatcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtg |
302 |
Q |
| |
|
|||| | || ||||||||||||||| |||| || ||||| | ||| |||||||| || | || ||||||||| ||||| |||||| | ||| || |
|
|
| T |
22481454 |
aatctttggagttgttcaataagaagacattcca---cgacttaaacggacgttgtccagaaaatcttattgatatatcttttaaaattgttgaaaaatg |
22481358 |
T |
|
| Q |
303 |
caagggcttaccactagcaattgtgact-attggtggtcttttatct |
348 |
Q |
| |
|
||| || || |||||||||||||| ||| ||||||||| |||||||| |
|
|
| T |
22481357 |
caatggattgccactagcaattgt-actcattggtggtattttatct |
22481312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 409
Target Start/End: Original strand, 21946092 - 21946312
Alignment:
| Q |
189 |
tttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaa |
288 |
Q |
| |
|
||||||| |||||||||| | || ||||| ||||||||||||||| ||||||||| | || |||| |||||| ||||| |||| ||||||| |||| |
|
|
| T |
21946092 |
tttaactcaagaacaatctttggagttgtttaataagaaggcatttaaatttgactatggtgggtgttatccaaatgagctaattggtatagctaatgaa |
21946191 |
T |
|
| Q |
289 |
attgctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtg |
388 |
Q |
| |
|
|||| | ||| || || || ||||| ||||||||| |||| ||||| ||||||||||| | |||| |||| | ||| |||||||||| ||| | |
|
|
| T |
21946192 |
attgtaaaaaaatggaatggtttaccgttagcaattgctgctatcggtggccttttatctacgagagagaaaaatttgtctgagtggcagagatttagag |
21946291 |
T |
|
| Q |
389 |
aaaatatgactttagagctaa |
409 |
Q |
| |
|
||||| | | ||||||||||| |
|
|
| T |
21946292 |
aaaatctaaatttagagctaa |
21946312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 428
Target Start/End: Complemental strand, 22628338 - 22628294
Alignment:
| Q |
384 |
tagtgaaaatatgactttagagctaaggaatgattcccatttgac |
428 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
22628338 |
tagtgaaaatatgactttagagctaaacaaggattcccatttgac |
22628294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 22208618 - 22208655
Alignment:
| Q |
313 |
ccactagcaattgtgactattggtggtcttttatctac |
350 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
22208618 |
ccacttgcaattgtggctattggtggtcttttatctac |
22208655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 22630594 - 22630485
Alignment:
| Q |
31 |
gtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaata |
130 |
Q |
| |
|
|||||||||||||||||| | || |||||| |||| ||||||| || | ||| |||| | ||||||||| |||||||||| || || | |||||| | |
|
|
| T |
22630594 |
gtgtttgatgatgtatgggaggcacaattttggtatgatattgaatttgctatgattgataacaaaaatggttgtaagatattaatcacaacaagaaaca |
22630495 |
T |
|
| Q |
131 |
aggatgttgc |
140 |
Q |
| |
|
|||||||||| |
|
|
| T |
22630494 |
aggatgttgc |
22630485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 18966990 - 18966946
Alignment:
| Q |
184 |
caacctttaactgaagaacaatcaattgatttgttcaataagaag |
228 |
Q |
| |
|
||||||||||| ||||||||||| || || ||||||||||||||| |
|
|
| T |
18966990 |
caacctttaaccgaagaacaatctatagagttgttcaataagaag |
18966946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 375
Target Start/End: Complemental strand, 22442739 - 22442560
Alignment:
| Q |
193 |
actgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattg |
292 |
Q |
| |
|
|||| ||||||||| | || ||||||||||||||||||||||| |||||| | ||| ||||||||||| | || |||| |||| ||| |||||| |
|
|
| T |
22442739 |
actgtagaacaatctttggagttgttcaataagaaggcatttca---tgacttaaacggacgttgtccaaaaaatcttattggtatatcttccaaaattg |
22442643 |
T |
|
| Q |
293 |
ctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatgg |
375 |
Q |
| |
|
| ||| ||||| || ||||||||||||||||| ||||||||| ||||| || | || || |||||| || |||||||| |
|
|
| T |
22442642 |
ttgaaaaatgcaatggattaccactagcaattgtagtcattggtggtattttagctcccaaagatagaaatacaattgaatgg |
22442560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1439 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: scaffold1439
Description:
Target: scaffold1439; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 94 - 326
Target Start/End: Complemental strand, 1686 - 1454
Alignment:
| Q |
94 |
aaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaa |
193 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1686 |
aaaaatggtagtaagatatttattaccacaagaaatatggatgttgctgtgtattgtaagaaatcttcttttattgaagtgcatgaactacaacctttaa |
1587 |
T |
|
| Q |
194 |
ctgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgc |
293 |
Q |
| |
|
|||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
1586 |
ctgaagaaaaatcatttgatttgtttaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatatcttttgaaatcgc |
1487 |
T |
|
| Q |
294 |
tagaaagtgcaagggcttaccactagcaattgt |
326 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||| |
|
|
| T |
1486 |
taggaagtgcaagggcttacccctagcaattgt |
1454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1439; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 1808 - 1714
Alignment:
| Q |
16 |
aagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagat |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
1808 |
aagaggtatgtttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgttgtgagtgataataaaaatggtagtaagat |
1714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 301 - 446
Target Start/End: Original strand, 40580513 - 40580658
Alignment:
| Q |
301 |
tgcaagggcttaccactagcaattgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactt |
400 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40580513 |
tgcaagggcttaccactagcaattgttactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatttagtgaaaatatgactt |
40580612 |
T |
|
| Q |
401 |
tagagctaaggaatgattcccatttgaccagaataaaaaagatttt |
446 |
Q |
| |
|
|||||||||||||||||||| |||||| | | |||||||||||||| |
|
|
| T |
40580613 |
tagagctaaggaatgattccgatttgatcgggataaaaaagatttt |
40580658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 66 - 245
Target Start/End: Original strand, 40580333 - 40580512
Alignment:
| Q |
66 |
tgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaataaggatgttgccatgtattgtaagaaatcttcgttt |
165 |
Q |
| |
|
|||||||||||||| | |||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||| ||||||||||||||| ||| ||| |
|
|
| T |
40580333 |
tgagattgaatatgctatgagtgataataaaaatggtagtaagatatttattacctcaagaagtatggatgttgcagtgtattgtaagaaattttctttt |
40580432 |
T |
|
| Q |
166 |
attgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgactt |
245 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40580433 |
attgaagtgcatgaactacaacctttaacagaagaaaaatcatttgatttgttcaacaagaaggcatttcaatttgactt |
40580512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 120
Target Start/End: Original strand, 40580244 - 40580327
Alignment:
| Q |
37 |
gatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattacc |
120 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| |||||||||| | |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40580244 |
gatgatgtatggaacaaaagtttttggggtgatattgaatatgctatgagtgataataaaaatggtagtaagatatttattacc |
40580327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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