View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7030_low_4 (Length: 443)
Name: NF7030_low_4
Description: NF7030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7030_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 3734031 - 3734348
Alignment:
| Q |
19 |
gtatagttatttgctgactaagctttgtatatatattcttcaaagttcaaaaccctttttaaggtaaattgtacatgagcaattgcaaactcaaacttgt |
118 |
Q |
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| T |
3734031 |
gtatagttatttgctgactaagctttgtatatatattcttcaaagttcaaaaccctttttaaagtaaattgtacatgagcaattgcaaactcaaacttgt |
3734130 |
T |
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| Q |
119 |
tgggaatttgaatattttcatgtaggaatactagtaacattagt-------------aaagaacttcttcatattatgtttgagctagcaagaatttgga |
205 |
Q |
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| T |
3734131 |
tgggaatttgaatattttcatgtaggaatactagtaacattagtaagagcatgcagcaaagaacttcttcatattatgtttgagctagcaagaatttgga |
3734230 |
T |
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| Q |
206 |
tgggtgtgcatgccttcataagttgttatcacataactcgaatcattattatctctctcaactcnnnnnnnnacaggacacccctccactgaacacctat |
305 |
Q |
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| T |
3734231 |
tgggtgtgcatgccttcataagttgttatcacataactcgaatcattattatctctctcaactcttttttttacaggacacccctccactgaacacctat |
3734330 |
T |
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| Q |
306 |
aataattcctgcaatcac |
323 |
Q |
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| T |
3734331 |
aataattcctgcaatcac |
3734348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 3734396 - 3734447
Alignment:
| Q |
375 |
caattaatttcatggtattccaatacatataccttggattagggctattctt |
426 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3734396 |
caattaatttcatggtattccaatatatataccttggattagggctattctt |
3734447 |
T |
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