View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7030_low_9 (Length: 281)
Name: NF7030_low_9
Description: NF7030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7030_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 40971714 - 40971449
Alignment:
| Q |
1 |
tgtttgaattcaaccttaggttggcctggcaacttcacaatgaaatcttcaattgggtacccttctaccctaataggtgtctcaaggaagcacccataac |
100 |
Q |
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| T |
40971714 |
tgtttgaattcaaccttaggttggcctggcaacttcacaatgaaatcttcaattgggtacccttctaccctaataggtgtctcaaggaagcacccataac |
40971615 |
T |
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| Q |
101 |
ccaccacaatcaacacccnnnnnnnccaagacttaaccattctaataactcaatttccctctcaagaaacacagcttatattcattgagaattcatttaa |
200 |
Q |
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| T |
40971614 |
ccaccacaatcaacacccaaaaaaaccaagacttaaccattctaataactcaatttccctctcaagaaacacagcctatattcattgagaagtcatttaa |
40971515 |
T |
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| Q |
201 |
ataatgtcaccaaattaaaaatagtaaatattaatatttttataatttgtttgaccaggagacaca |
266 |
Q |
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| T |
40971514 |
ataatgtcaccaaattaaaaatagtaaatattaatatttttattatttgtttgaccaggagacaca |
40971449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 40962022 - 40962086
Alignment:
| Q |
5 |
tgaattcaaccttaggttggcctggcaacttcacaatgaaatcttcaattgggtacccttctacc |
69 |
Q |
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|||||| ||| || ||||||||||| | |||||||| | ||||||||||||||||||||||||| |
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| T |
40962022 |
tgaatttaactttgggttggcctggtagcttcacaactagatcttcaattgggtacccttctacc |
40962086 |
T |
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