View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7031_high_2 (Length: 493)
Name: NF7031_high_2
Description: NF7031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7031_high_2 |
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| [»] scaffold0064 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 129 - 324
Target Start/End: Complemental strand, 20676308 - 20676112
Alignment:
| Q |
129 |
ttcacaccattacaaaccatctcgccttgtgccaagacccatgcttggggggctatatggacc-agtaacctgtatacagatcatacatgtacccttagg |
227 |
Q |
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| T |
20676308 |
ttcacgcctttacaaaccatctcgccttgtcccaaggctcatgcttggggggctatatggaccaagtaacctgtacacatatgatacatgtacccttagg |
20676209 |
T |
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| Q |
228 |
gactatt-aaacatttcaaaatcgcccctagggaaacactctaaacacagattgcacatataccctcgggagcttccaaagcactctaggatcgccct |
324 |
Q |
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| T |
20676208 |
gactattaaaacattttaagatcg-ccctaaggaaatgctctaaacacagatcacacatatatccccgggggcttccagaacactctaggatcgccct |
20676112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 128 - 340
Target Start/End: Complemental strand, 16078353 - 16078138
Alignment:
| Q |
128 |
attcacaccattacaaaccatctcgccttgtgccaagacccatgcttggggggctatatggacc-agtaacctgtatacagatcatacatgtacccttag |
226 |
Q |
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| T |
16078353 |
attcacgcctttacaaaccatctcgccttgtcccaagactcatgcttgggggactatatggaccaagtaacatgtacacagatggtacatgtacccttgg |
16078254 |
T |
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| Q |
227 |
ggactatt-aaacatttcaaaatcgccc-ctagggaaacactctaaacacagattgcacatataccctcgggagcttccaaagcactctaggatcgccct |
324 |
Q |
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| T |
16078253 |
cgaatattaaaacattttaagatcgccctataggaaaatgctctaaacacagatcaaacatatatccttgggggcttccagaacaatctaggatcgccct |
16078154 |
T |
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| Q |
325 |
tggtgaatcctccaaa |
340 |
Q |
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| T |
16078153 |
aggaggatcctccaaa |
16078138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 404 - 459
Target Start/End: Complemental strand, 23757582 - 23757527
Alignment:
| Q |
404 |
gctaaaacttaatagtactacgagcaccagcaaccaaatatataaaaggctggcta |
459 |
Q |
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| T |
23757582 |
gctaaaacttaatagtacaacgagcaccagcaaccaaatatataaaaggctagcta |
23757527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 9068646 - 9068701
Alignment:
| Q |
138 |
ttacaaaccatctcgccttgtgc-caagacccatgcttggggggctatatggacca |
192 |
Q |
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| T |
9068646 |
ttacaaaccatatcgccttgttctcaagactcatgcttggggggctatatggacca |
9068701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 183
Target Start/End: Complemental strand, 26408 - 26365
Alignment:
| Q |
140 |
acaaaccatctcgccttgtgccaagacccatgcttggggggcta |
183 |
Q |
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| T |
26408 |
acaaaccatctcgccttgtaccaaggctcatgcttggggggcta |
26365 |
T |
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