View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7031_high_6 (Length: 231)

Name: NF7031_high_6
Description: NF7031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7031_high_6
NF7031_high_6
[»] chr3 (4 HSPs)
chr3 (45-193)||(25159888-25160036)
chr3 (45-194)||(25414789-25414938)
chr3 (45-191)||(55073509-55073655)
chr3 (137-190)||(25288911-25288964)
[»] chr1 (6 HSPs)
chr1 (43-191)||(43365986-43366134)
chr1 (45-188)||(41731561-41731704)
chr1 (194-231)||(9578957-9578994)
chr1 (197-231)||(9584501-9584535)
chr1 (1-45)||(9578916-9578959)
chr1 (1-41)||(9584455-9584494)
[»] chr7 (1 HSPs)
chr7 (45-191)||(7077236-7077382)
[»] chr5 (1 HSPs)
chr5 (44-157)||(14272172-14272285)


Alignment Details
Target: chr3 (Bit Score: 117; Significance: 9e-60; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 45 - 193
Target Start/End: Complemental strand, 25160036 - 25159888
Alignment:
Q  45 agtatgtctttggtacacagtttgcattcaagaatcacgctgaaacacatttttcaatgcaaattttaaagcaaaagctgaactctacatactgcagctt 144  Q
    ||||||| ||||||||||| ||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  25160036 agtatgtgtttggtacacaatttgcattcaagaatcaagttgaaacacattttccaatgcaaattttaaagcaaaagctgaactctacatattgcagctt 25159937  T
Q  145 ctatgcaaacggcgatttcttcaattctaccgctacaacaaacacagta 193  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||    
T  25159936 ctatgcaaacggcgttttcttcaattccaccgctacaacaaacacagta 25159888  T

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Target: chr3; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 45 - 194
Target Start/End: Complemental strand, 25414938 - 25414789
Alignment:
Q  45 agtatgtctttggtacacagtttgcattcaagaatcacgctgaaacacatttttcaatgcaaattttaaagcaaaagctgaactctacatactgcagctt 144  Q
    ||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| || |||||    
T  25414938 agtatgtgtttggtacatagtttgcattcaagaatcacgttgaaacacatttttcaatgcaaattttaaagcaaaaactgaattctacatattgtagctt 25414839  T
Q  145 ctatgcaaacggcgatttcttcaattctaccgctacaacaaacacagtat 194  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  25414838 ctatgcaaacggcgttttcttcaattccaccgctacaacaaacacagtat 25414789  T

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Target: chr3; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 45 - 191
Target Start/End: Original strand, 55073509 - 55073655
Alignment:
Q  45 agtatgtctttggtacacagtttgcattcaagaatcacgctgaaacacatttttcaatgcaaattttaaagcaaaagctgaactctacatactgcagctt 144  Q
    ||||||| |||||||||||| ||||||| || ||||||| ||||||||||||||||||||||||||||||||||||| |||||| || ||| ||||||||    
T  55073509 agtatgtgtttggtacacagattgcatttaaaaatcacgttgaaacacatttttcaatgcaaattttaaagcaaaagttgaactttatatattgcagctt 55073608  T
Q  145 ctatgcaaacggcgatttcttcaattctaccgctacaacaaacacag 191  Q
    |||| ||||||||| |||||||||||| |||||||||||||||||||    
T  55073609 ctatacaaacggcgttttcttcaattccaccgctacaacaaacacag 55073655  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 25288911 - 25288964
Alignment:
Q  137 tgcagcttctatgcaaacggcgatttcttcaattctaccgctacaacaaacaca 190  Q
    ||||||||||||||||||  || |||||| ||||| || |||||||||||||||    
T  25288911 tgcagcttctatgcaaacaacgttttctttaattccactgctacaacaaacaca 25288964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 9e-60; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 43 - 191
Target Start/End: Original strand, 43365986 - 43366134
Alignment:
Q  43 taagtatgtctttggtacacagtttgcattcaagaatcacgctgaaacacatttttcaatgcaaattttaaagcaaaagctgaactctacatactgcagc 142  Q
    ||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  43365986 taagtatgtgtttggtacacagtttgcatttaagaatcacgttgaaacacatttttcaatgcaaattttaaagcaaaagttgaactctacatattgcagc 43366085  T
Q  143 ttctatgcaaacggcgatttcttcaattctaccgctacaacaaacacag 191  Q
    |||||| ||||||||| |||||||||||| |||||||||||||||||||    
T  43366086 ttctatacaaacggcgttttcttcaattccaccgctacaacaaacacag 43366134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 45 - 188
Target Start/End: Original strand, 41731561 - 41731704
Alignment:
Q  45 agtatgtctttggtacacagtttgcattcaagaatcacgctgaaacacatttttcaatgcaaattttaaagcaaaagctgaactctacatactgcagctt 144  Q
    ||||||| |||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  41731561 agtatgtgtttgatacacagtttgcattcaagaatcacgttgaaacacattttccaatgcaaattttaaagcaaaagctgaactctacatattgcagctt 41731660  T
Q  145 ctatgcaaacggcgatttcttcaattctaccgctacaacaaaca 188  Q
    ||||||||||  ||  || |||||||| ||||||||||||||||    
T  41731661 ctatgcaaacaacgtattattcaattccaccgctacaacaaaca 41731704  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 9578957 - 9578994
Alignment:
Q  194 taaagcaaagtttataaaattattgctacaaggaatag 231  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9578957 taaagcaaagtttataaaattattgctacaaggaatag 9578994  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Original strand, 9584501 - 9584535
Alignment:
Q  197 agcaaagtttataaaattattgctacaaggaatag 231  Q
    |||||||||||||||||||||| ||||||||||||    
T  9584501 agcaaagtttataaaattattgttacaaggaatag 9584535  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 9578916 - 9578959
Alignment:
Q  1 gagttggtaattggttcagttaatccactcatgttgaatgcctaa 45  Q
    |||||||||||||||||| ||||| || |||||||||||||||||    
T  9578916 gagttggtaattggttcaattaat-cagtcatgttgaatgcctaa 9578959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 9584455 - 9584494
Alignment:
Q  1 gagttggtaattggttcagttaatccactcatgttgaatgc 41  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  9584455 gagttggtaattggttcagttaat-cagtcatgttgaatgc 9584494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 45 - 191
Target Start/End: Complemental strand, 7077382 - 7077236
Alignment:
Q  45 agtatgtctttggtacacagtttgcattcaagaatcacgctgaaacacatttttcaatgcaaattttaaagcaaaagctgaactctacatactgcagctt 144  Q
    ||||||| |||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||    
T  7077382 agtatgtgtttggtacacagtttgcatttaagaatcacgttgaaacacattttccaatgcaaattttaaagcaaaagttgaactctacatattgcagctt 7077283  T
Q  145 ctatgcaaacggcgatttcttcaattctaccgctacaacaaacacag 191  Q
    |||| ||||||||| |||||||||||| |||||||||||||||||||    
T  7077282 ctatacaaacggcgttttcttcaattccaccgctacaacaaacacag 7077236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 157
Target Start/End: Original strand, 14272172 - 14272285
Alignment:
Q  44 aagtatgtctttggtacacagtttgcattcaagaatcacgctgaaacacatttttcaatgcaaattttaaagcaaaagctgaactctacatactgcagct 143  Q
    |||||||| ||||||| |||||||||| |||||||||||| | |||||||| || |||| |||||||||  ||||||||| || |||| | | || ||||    
T  14272172 aagtatgtgtttggtatacagtttgcactcaagaatcacgtttaaacacatcttccaatacaaattttagcgcaaaagctaaattctagagattgtagct 14272271  T
Q  144 tctatgcaaacggc 157  Q
    | | ||||||||||    
T  14272272 tatgtgcaaacggc 14272285  T

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