View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7031_low_1 (Length: 602)
Name: NF7031_low_1
Description: NF7031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7031_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 7 - 592
Target Start/End: Original strand, 45245848 - 45246422
Alignment:
| Q |
7 |
ttggaaaggccaatcttgctttgaatttcaactgccgaggcaaaatgacgatcatattcaattcaaatgatttgaattttagaagggtttgccatgctat |
106 |
Q |
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| T |
45245848 |
ttggaaagaccaatcttgctttgaatttcaactgccgatgcaaaatgacgatcatattcaattcaaatgatttgaattttagaagggtttgccatgctat |
45245947 |
T |
|
| Q |
107 |
agttcaaatgatggttcatttaaatgatttgaattagagaatgttttctcttttgtatattgattgtgttttaaatgtcttgccttttcactctgcaggt |
206 |
Q |
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| T |
45245948 |
agttcaaatgatggttcatt---------------agagaatgttttctcttttgtatattgattgtgttttaaatgtcttgccttttcactctgcaggt |
45246032 |
T |
|
| Q |
207 |
atatgtttcccaaatcctagcttcagtaccatccacaaacaatgctttttcaccacaagattcatgttacaatactgctcattcattatcaagtgaagaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45246033 |
atatgtttcccaaatcctagcttcagtaccatccacaaacaatgctttttgaccacaagattcatgttacaatactgctcattcattatcaagtgaagaa |
45246132 |
T |
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| Q |
307 |
gttgcagaaacttgcttggatgaccaaaaatgaatttattgaacggttcctttgattctttatcattgtgtattttgtcatttgaactcaaatatatttg |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45246133 |
gttgcagaaacttgcttggatgaccaaaaatgaatttattgaacggttcctttgattctttatcattgtgtattttgtcatttgaactcaaatatatttg |
45246232 |
T |
|
| Q |
407 |
tgctttgattcttcatcattacatataattaaatgaatagatattttactcaagttctcatacttgtgctat----tcggtacatgatttcagactctgc |
502 |
Q |
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| T |
45246233 |
tgctttgattcttcatcattacatataattaaatgaatagatattttactcaagttctcatatttgtgctattcgatcggtacatgatttcagactctgc |
45246332 |
T |
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| Q |
503 |
taagacagatagcagaaatactaaatactttgtcaaaatgatagacaatttgtatcaccaagtatgaagaaatactatttgacattgatg |
592 |
Q |
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| T |
45246333 |
taagacagatagcagaaatactaaatactttgtcaaaatgatagacaatttgtatcaccaagtatgaagaaatactatttgacattgatg |
45246422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 146 - 304
Target Start/End: Original strand, 48885966 - 48886130
Alignment:
| Q |
146 |
aatgttttctcttttgtatattgattgtgttttaaatgtcttgccttttcac----tctgcaggtatatgtttcccaaatcctagcttcagtaccatcca |
241 |
Q |
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| T |
48885966 |
aatgttttctcctttgtatagtgattgtcttttaaatgtctttccttttcaccctgtctgcaggtaaatgtttcccaacttctagcttcaatgccaacca |
48886065 |
T |
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| Q |
242 |
caaacaatgctttttcaccacaagattcatg--ttacaatactgctcattcattatcaagtgaag |
304 |
Q |
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| T |
48886066 |
caagtcatgctttttcaccacaggagtcacgctatacagtactgttcattcattatcaagtgaag |
48886130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 51121925 - 51122001
Alignment:
| Q |
140 |
ttagagaatgttttctcttttgtatattgattgtgttttaaatgtcttgccttttcactctgcaggtatatgtttcc |
216 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| || ||||| |
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| T |
51121925 |
ttagagaatgttttctaatttgtatagtgattgtgttttaaatgtcttgccttttcactttgcaggtaaatctttcc |
51122001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 282
Target Start/End: Original strand, 50675791 - 50675875
Alignment:
| Q |
198 |
tctgcaggtatatgtttcccaaatcctagcttcagtaccatccacaaacaatgctttttcaccacaagattcatgttacaatact |
282 |
Q |
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||||| |||| ||||||||||||| |||||||| |||||||||||| |||||||||||||| | | |||||| || |||||| |
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| T |
50675791 |
tctgctggtaaatgtttcccaaattctagcttcgataccatccacaagtcatgctttttcaccatagggttcatgctataatact |
50675875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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