View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7031_low_10 (Length: 228)
Name: NF7031_low_10
Description: NF7031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7031_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 27159321 - 27159429
Alignment:
| Q |
8 |
taccgaccttaaaaaatacctctttggttttcatacttcactactacacctataggttaacataaatggaccgaccctaaatatatgatgtgttcttcac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27159321 |
taccgaccttaaaaaatacctctttggttttcatacttcactacctcacctataggttaacataaatggaccgaccctaaatatatgatgtgttcttcac |
27159420 |
T |
|
| Q |
108 |
ccacactta |
116 |
Q |
| |
|
||||||||| |
|
|
| T |
27159421 |
ccacactta |
27159429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 148 - 228
Target Start/End: Original strand, 27159428 - 27159508
Alignment:
| Q |
148 |
taatacaaaaccacattttagacatacaagtacagccacgttatttcactttatatgtcaccatattaatttcttgacttt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27159428 |
taatacaaaaccacattttagacatacaagtacagccacgttatttcattttatatgtcaccatattaatttcttgacttt |
27159508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 228
Target Start/End: Original strand, 27143790 - 27143876
Alignment:
| Q |
144 |
accataatacaaaaccacattttaga--catacaagtacagccacgttatttcactttatatgtcaccatattaatttcttgacttt |
228 |
Q |
| |
|
||||||||||||| | |||||||| | || |||| ||| |||||||| | || ||||| |||||||||||||||||||||||||| |
|
|
| T |
27143790 |
accataatacaaagcaacattttacatgcacacaattactgccacgttgatccattttatgtgtcaccatattaatttcttgacttt |
27143876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University