View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7031_low_2 (Length: 581)

Name: NF7031_low_2
Description: NF7031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7031_low_2
NF7031_low_2
[»] chr2 (3 HSPs)
chr2 (1-564)||(45245235-45245798)
chr2 (227-276)||(31333598-31333647)
chr2 (227-276)||(31340328-31340377)
[»] chr3 (2 HSPs)
chr3 (306-564)||(51121043-51121305)
chr3 (456-561)||(51113934-51114039)
[»] chr4 (10 HSPs)
chr4 (439-561)||(570175-570297)
chr4 (447-560)||(8187245-8187358)
chr4 (439-484)||(659532-659577)
chr4 (520-561)||(553384-553425)
chr4 (447-564)||(55505255-55505372)
chr4 (227-263)||(644286-644322)
chr4 (339-410)||(1553051-1553122)
chr4 (448-506)||(640748-640806)
chr4 (448-506)||(1600364-1600422)
chr4 (451-561)||(12121610-12121720)
[»] chr8 (4 HSPs)
chr8 (447-559)||(34936318-34936430)
chr8 (356-410)||(18315518-18315572)
chr8 (510-561)||(21235453-21235504)
chr8 (321-393)||(27922208-27922280)
[»] chr6 (2 HSPs)
chr6 (527-564)||(10579887-10579924)
chr6 (473-561)||(12102164-12102252)


Alignment Details
Target: chr2 (Bit Score: 536; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Complemental strand, 45245798 - 45245235
Alignment:
Q  1 cgaactttggttggagagagtaagttgacaaagattaggagataaggaaacagggtgaggaaactggccatggaaattaaaccaagaaagtcctcaccaa 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45245798 cgaactttggttggagagagttagttgacaaagattaggagataaggaaacagggtgaggaaactggccatggaaattaaaccaagaaagtcctcaccaa 45245699  T
Q  101 aaccaatagaccataaaaaatgcattagaaacagtgcaacatgtactacttacaaaattcatctttgttggtagatttaatcttatgaatgaaaaatact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  45245698 aaccaatagaccataaaaaatgcattagaaacagtgcaacatgtactacttacaaaattcatctttgttggtagatttaatcttatgaatgaaaaatgct 45245599  T
Q  201 taagcaggtagttaaagatgctctgtagagattctattgattttatatattcagaaaagtaacagcagagaaaagtgtgttacatcaagaagtattctaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  45245598 taagcaggtagttaaagatgctctgtagagattctattgattttatatattcagaaaagtaacagcagagaaaagtgtgttacaacaagaagtattctaa 45245499  T
Q  301 aagaagtaaattcgaaaacaaaaaacatctcacatttcaaagttcaaacttaagtagagcagtttcagaatgctagcaaacaaggcatccttggcgcgac 400  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45245498 aagaagtaaattcgaaaacaaaaaacatcttacacttcaaagttcaaacttaagtagagcagtttcagaatgctagcaaacaaggcatccttgacgcgac 45245399  T
Q  401 aagagttcccgctcttgttgactgatatgataaagaactggaacatttatctttttcaacgatggccttgaaaataccatcgagacaataacattagcat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45245398 aagagttcccgctcttgttgactgatatgataaagaactggaacatttatctttttcaacgatggccttgaaaataccatcgagacaataacattagcat 45245299  T
Q  501 gcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgcagttttctaccacatgttt 564  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  45245298 gcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgcaattttctaccacatgttt 45245235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 31333647 - 31333598
Alignment:
Q  227 agagattctattgattttatatattcagaaaagtaacagcagagaaaagt 276  Q
    ||||||| |||||||||||||||||||||||||||||  || ||||||||    
T  31333647 agagattttattgattttatatattcagaaaagtaactacaaagaaaagt 31333598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 31340377 - 31340328
Alignment:
Q  227 agagattctattgattttatatattcagaaaagtaacagcagagaaaagt 276  Q
    ||||||| |||||||||||||||||||||||||||||  || ||||||||    
T  31340377 agagattttattgattttatatattcagaaaagtaactacaaagaaaagt 31340328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 306 - 564
Target Start/End: Complemental strand, 51121305 - 51121043
Alignment:
Q  306 gtaaattcgaaaacaaaaaacatctcacatttcaaa-gttcaaacttaagtagagcagtttcagaatgctagcaaacaaggcatccttgg---cgcgaca 401  Q
    ||||||| ||||||||||||||||| |||||||||| ||||||||||    |||||||  |||||||||||||||||||| || || ||    ||||| |    
T  51121305 gtaaatttgaaaacaaaaaacatcttacatttcaaaagttcaaacttccacagagcagcctcagaatgctagcaaacaagacaaccatgatgacgcgaaa 51121206  T
Q  402 agagttcccgctcttgttgactgatatgataa-agaactggaacatttatctttttcaacgatggccttgaaaataccatcgagacaataacattagcat 500  Q
    ||||||||| ||||   |   ||| ||||||| ||||  ||||||  ||||||| ||||||||| ||||||||| || || ||| ||| || || |||||    
T  51121205 agagttccctctctctatctttgaaatgataagagaaa-ggaacaaatatctttctcaacgatgaccttgaaaagactattgaggcaacaaaatcagcat 51121107  T
Q  501 gcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgcagttttctaccacatgttt 564  Q
    | |||| | |||| | |||||| |||||| || | | |||||||||||||||||||||||||||    
T  51121106 ggactttatagcaatacctcaagttgatcactctcaattgtgtgcagttttctaccacatgttt 51121043  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 456 - 561
Target Start/End: Complemental strand, 51114039 - 51113934
Alignment:
Q  456 tcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgcagttttctac 555  Q
    |||| |||||||||||||||| ||| ||| ||| || |||||||||||||| ||| ||   | | ||||| |||||| | |||| |||||| ||||||||    
T  51114039 tcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcttagttttgtgcatttttctac 51113940  T
Q  556 cacatg 561  Q
    ||||||    
T  51113939 cacatg 51113934  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 439 - 561
Target Start/End: Original strand, 570175 - 570297
Alignment:
Q  439 tggaacatttatctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagt 538  Q
    ||||||| |||||||| |||| ||||| ||||| |||| ||||||| ||| || |||   |||||||| | |||||| | |||||||||||||  | |||    
T  570175 tggaacagttatctttctcaatgatggtcttgataatatcatcgagtcaacaatatttttatgcactttatagcagttcttcaaattgatctccctcagt 570274  T
Q  539 tgtgtgcagttttctaccacatg 561  Q
    |||||||||||||||||||||||    
T  570275 tgtgtgcagttttctaccacatg 570297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 447 - 560
Target Start/End: Complemental strand, 8187358 - 8187245
Alignment:
Q  447 ttatctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgca 546  Q
    |||||||| ||| ||||||||||||||||| ||||||| ||| ||||| || |||||| | | ||||| |||||| |||||  ||||| ||||| |||||    
T  8187358 ttatctttctcagcgatggccttgaaaatatcatcgagtcaacaacatcaggatgcacattatagcagcgcctcagattgacttctgtcagttgcgtgca 8187259  T
Q  547 gttttctaccacat 560  Q
    ||||| ||||||||    
T  8187258 gttttttaccacat 8187245  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 439 - 484
Target Start/End: Original strand, 659532 - 659577
Alignment:
Q  439 tggaacatttatctttttcaacgatggccttgaaaataccatcgag 484  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  659532 tggaacaattatctttttcaacgatggccttgaaaataccatcgag 659577  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 520 - 561
Target Start/End: Original strand, 553384 - 553425
Alignment:
Q  520 caaattgatctctgtaagttgtgtgcagttttctaccacatg 561  Q
    ||||| ||||||| ||||||||||||||||||||||||||||    
T  553384 caaatcgatctctctaagttgtgtgcagttttctaccacatg 553425  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 447 - 564
Target Start/End: Complemental strand, 55505372 - 55505255
Alignment:
Q  447 ttatctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgca 546  Q
    |||||||| |||| |||||||||||||||||||| ||| ||| |||| ||| |||||||| |   ||     |||| ||||||||| | |||||||||||    
T  55505372 ttatctttctcaatgatggccttgaaaataccattgagtcaacaacactagtatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgca 55505273  T
Q  547 gttttctaccacatgttt 564  Q
    |||||||| ||| |||||    
T  55505272 gttttctaacacgtgttt 55505255  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 644286 - 644322
Alignment:
Q  227 agagattctattgattttatatattcagaaaagtaac 263  Q
    ||||||| |||||||||||||||||||||||||||||    
T  644286 agagattttattgattttatatattcagaaaagtaac 644322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 410
Target Start/End: Complemental strand, 1553122 - 1553051
Alignment:
Q  339 aaagttcaaacttaagtagagcagtttcagaatgctagcaaacaaggcatccttggcgcgacaagagttccc 410  Q
    ||||||||||||| || |||| |||||  |||| |||||||||||| ||||||||  |||| ||||||||||    
T  1553122 aaagttcaaacttcagaagagtagttttggaatactagcaaacaagacatccttgatgcgagaagagttccc 1553051  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 506
Target Start/End: Original strand, 640748 - 640806
Alignment:
Q  448 tatctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcactt 506  Q
    ||||||| |||| |||||||||||||||||||| ||| |||  |||||||||| |||||    
T  640748 tatctttctcaatgatggccttgaaaataccattgagtcaacgacattagcattcactt 640806  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 506
Target Start/End: Original strand, 1600364 - 1600422
Alignment:
Q  448 tatctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcactt 506  Q
    ||||||| |||| ||||||||| ||| |||||||||||||| ||| ||||||| |||||    
T  1600364 tatctttctcaaggatggccttaaaagtaccatcgagacaacaaccttagcattcactt 1600422  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 561
Target Start/End: Complemental strand, 12121720 - 12121610
Alignment:
Q  451 ctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgcagttt 550  Q
    |||| |||| |||||||||||||||| ||  ||| ||| ||||| |  |||||||||||  || |   |||||| ||||||| | ||||||||||| |||    
T  12121720 ctttctcaatgatggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgcatttt 12121621  T
Q  551 tctaccacatg 561  Q
    |||||||||||    
T  12121620 tctaccacatg 12121610  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 447 - 559
Target Start/End: Complemental strand, 34936430 - 34936318
Alignment:
Q  447 ttatctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgca 546  Q
    |||||||| ||||| |||||||||||  || |||||||  || ||||||||||| ||||| |  ||||| |||||||||||||||  | | |||||||||    
T  34936430 ttatctttctcaacaatggccttgaagttatcatcgaggtaacaacattagcatccactttatggcagttcctcaaattgatctccctcaattgtgtgca 34936331  T
Q  547 gttttctaccaca 559  Q
     ||||| ||||||    
T  34936330 attttcaaccaca 34936318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 410
Target Start/End: Complemental strand, 18315572 - 18315518
Alignment:
Q  356 agagcagtttcagaatgctagcaaacaaggcatccttggcgcgacaagagttccc 410  Q
    |||| ||||| ||||||||||||||||||||||| ||| ||||| ||||||||||    
T  18315572 agagtagtttgagaatgctagcaaacaaggcatctttgacgcgagaagagttccc 18315518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 561
Target Start/End: Original strand, 21235453 - 21235504
Alignment:
Q  510 agcagtgcctcaaattgatctctgtaagttgtgtgcagttttctaccacatg 561  Q
    |||||| | |||||||||||||  | ||||||||||||||||||||||||||    
T  21235453 agcagttcttcaaattgatctccctcagttgtgtgcagttttctaccacatg 21235504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 321 - 393
Target Start/End: Original strand, 27922208 - 27922280
Alignment:
Q  321 aaaaacatctcacatttcaaagttcaaacttaagtagagcagtttcagaatgctagcaaacaaggcatccttg 393  Q
    |||||||||| |||||||| || |||||||| || |||  | ||  | |||||||||||||||||||||||||    
T  27922208 aaaaacatcttacatttcagagctcaaacttcagcagaagacttcaacaatgctagcaaacaaggcatccttg 27922280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 527 - 564
Target Start/End: Complemental strand, 10579924 - 10579887
Alignment:
Q  527 atctctgtaagttgtgtgcagttttctaccacatgttt 564  Q
    |||||| |||||||||||||||||||||||||||||||    
T  10579924 atctctctaagttgtgtgcagttttctaccacatgttt 10579887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 561
Target Start/End: Original strand, 12102164 - 12102252
Alignment:
Q  473 aataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgcagttttctaccacatg 561  Q
    |||| ||||||| ||| |||||||  | |||||| | |||||| | ||| |||| ||||| | ||||||||||||||||||||||||||    
T  12102164 aatatcatcgagtcaacaacattatgaagcactttatagcagttcttcagattgctctctctcagttgtgtgcagttttctaccacatg 12102252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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