View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7031_low_5 (Length: 284)
Name: NF7031_low_5
Description: NF7031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7031_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 46 - 267
Target Start/End: Original strand, 28323276 - 28323498
Alignment:
| Q |
46 |
ccgtcgtcctcgtcgtaaagcagcaacggtggccgataaattattgccaccgtaaatttgacagaattcgcatgcattgaagtagatgggaagcagccaa |
145 |
Q |
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| T |
28323276 |
ccgttgtcctcgccgtaaagcagcaacggtggccgttaaattattgccaccgtaaatttgacataattcgcatgcattgaagtagatgggaagcagccaa |
28323375 |
T |
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| Q |
146 |
atttgagcttcaaacaaa-ccatgaaaccaaatcaataacttttttggattctacacttcacttgtttggattcaagcttcaacaaattcattgattcga |
244 |
Q |
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||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28323376 |
ctttgagcttcaaacaaacccaagaaaccaaatcaataacttttttggattctacacttcacttgtttggattcaagcttcaacaaattcattgattcga |
28323475 |
T |
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| Q |
245 |
atttcgatgttaatgcttcctgc |
267 |
Q |
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||||||||||||||||||||||| |
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| T |
28323476 |
atttcgatgttaatgcttcctgc |
28323498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 28323202 - 28323277
Alignment:
| Q |
18 |
cccgcccgaccactcacaatccttccaaccgtcgtcctcgtcgtaaagcagcaacggtggccgataaattattgcc |
93 |
Q |
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| T |
28323202 |
cccgcccgaccactcacaatccttccaaccgttgtcctcgccgtaaagcagcaacggtggccgttaaattattgcc |
28323277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 82 - 203
Target Start/End: Complemental strand, 22632023 - 22631902
Alignment:
| Q |
82 |
taaattattgccaccg-taaatttgacagaattcgcatgcattgaagtagatgggaagcagccaaatttgagcttcaaacaaaccatgaaaccaaatca- |
179 |
Q |
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| T |
22632023 |
taaatcattgccacccataaattcgacagaattcatatgcattgaagt----gggaagcagacaacttttagcttcaaacaaaccaagaaaccaaatcaa |
22631928 |
T |
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| Q |
180 |
--ataacttttttggattctacactt |
203 |
Q |
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||||||| |||||||||||||||| |
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| T |
22631927 |
taataacttgtttggattctacactt |
22631902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 22631831 - 22631784
Alignment:
| Q |
216 |
ttcaagcttcaacaaattcattgattcgaatttcgatgttaatgcttc |
263 |
Q |
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| T |
22631831 |
ttcaagcttcaacagattcattgattcgaatttggatgttaatgcttc |
22631784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 82 - 203
Target Start/End: Complemental strand, 36233824 - 36233703
Alignment:
| Q |
82 |
taaattattgccaccg-taaatttgacagaattcgcatgcattgaagtagatgggaagcagccaaatttgagcttcaaacaaaccatgaaaccaaatca- |
179 |
Q |
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||||| ||||||||| |||||| |||| ||||| |||||||||||| ||||||||||||| ||| |||||||||||||||| |||||||||||| |
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| T |
36233824 |
taaatcattgccacccataaattcgacataattcatatgcattgaagt----gggaagcagccaacttttagcttcaaacaaaccaagaaaccaaatcaa |
36233729 |
T |
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| Q |
180 |
--ataacttttttggattctacactt |
203 |
Q |
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||||||| |||||||||||||||| |
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| T |
36233728 |
taataacttgtttggattctacactt |
36233703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 255
Target Start/End: Complemental strand, 36233632 - 36233593
Alignment:
| Q |
216 |
ttcaagcttcaacaaattcattgattcgaatttcgatgtt |
255 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |
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| T |
36233632 |
ttcaagcttcaacaaattcattgattcgaatttggatgtt |
36233593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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