View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7031_low_7 (Length: 260)

Name: NF7031_low_7
Description: NF7031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7031_low_7
NF7031_low_7
[»] chr2 (19 HSPs)
chr2 (175-230)||(23757418-23757473)
chr2 (95-175)||(25219663-25219743)
chr2 (98-175)||(10202194-10202271)
chr2 (82-177)||(32517842-32517937)
chr2 (105-177)||(39417474-39417546)
chr2 (98-175)||(44948043-44948120)
chr2 (36-68)||(20571032-20571064)
chr2 (109-175)||(5887603-5887669)
chr2 (82-177)||(25219867-25219962)
chr2 (97-132)||(33898254-33898289)
chr2 (98-132)||(45049409-45049443)
chr2 (97-177)||(636987-637068)
chr2 (82-130)||(16535015-16535061)
chr2 (97-177)||(18741422-18741503)
chr2 (97-133)||(7607309-7607345)
chr2 (98-130)||(8859359-8859391)
chr2 (105-176)||(13491057-13491129)
chr2 (98-173)||(18779935-18780010)
chr2 (98-130)||(23957076-23957108)
[»] chr7 (11 HSPs)
chr7 (74-177)||(12645322-12645425)
chr7 (98-143)||(47459440-47459486)
chr7 (98-158)||(9380015-9380076)
chr7 (97-177)||(9506866-9506947)
chr7 (97-177)||(46021455-46021536)
chr7 (98-132)||(2228150-2228184)
chr7 (98-175)||(31717321-31717398)
chr7 (98-175)||(35157111-35157188)
chr7 (98-130)||(3861408-3861440)
chr7 (98-158)||(10166894-10166954)
chr7 (83-170)||(37938097-37938184)
[»] chr1 (17 HSPs)
chr1 (97-175)||(43837111-43837188)
chr1 (97-177)||(13116949-13117030)
chr1 (98-177)||(27078572-27078651)
chr1 (82-158)||(43025896-43025971)
chr1 (74-177)||(37186841-37186944)
chr1 (98-175)||(45007719-45007795)
chr1 (97-177)||(236593-236672)
chr1 (98-175)||(39787677-39787754)
chr1 (98-175)||(48391980-48392057)
chr1 (98-175)||(49948265-49948342)
chr1 (98-132)||(50248053-50248087)
chr1 (98-158)||(40241512-40241573)
chr1 (97-176)||(8312553-8312633)
chr1 (98-173)||(11797428-11797503)
chr1 (77-175)||(13048834-13048930)
chr1 (77-175)||(13053831-13053927)
chr1 (98-130)||(36018902-36018934)
[»] chr4 (13 HSPs)
chr4 (97-177)||(24870620-24870701)
chr4 (97-177)||(33530242-33530323)
chr4 (82-177)||(37340132-37340226)
chr4 (97-175)||(13632113-13632191)
chr4 (97-158)||(11311570-11311631)
chr4 (101-175)||(42550449-42550524)
chr4 (98-175)||(579269-579346)
chr4 (98-132)||(1052953-1052987)
chr4 (74-175)||(28758378-28758479)
chr4 (98-175)||(46488144-46488221)
chr4 (97-177)||(9696316-9696397)
chr4 (98-158)||(28187207-28187268)
chr4 (98-135)||(47384222-47384259)
[»] chr5 (9 HSPs)
chr5 (98-175)||(42559856-42559933)
chr5 (105-177)||(26526544-26526617)
chr5 (77-175)||(4429968-4430064)
chr5 (97-158)||(10109934-10109996)
chr5 (98-175)||(27389954-27390031)
chr5 (98-132)||(36259821-36259855)
chr5 (98-158)||(11968800-11968861)
chr5 (106-177)||(1271129-1271201)
chr5 (96-124)||(15067218-15067246)
[»] chr8 (7 HSPs)
chr8 (70-177)||(39709648-39709755)
chr8 (97-135)||(5917305-5917343)
chr8 (83-175)||(38216782-38216872)
chr8 (98-158)||(2442786-2442847)
chr8 (97-177)||(11021360-11021441)
chr8 (111-175)||(7882894-7882957)
chr8 (73-124)||(40999754-40999803)
[»] chr3 (7 HSPs)
chr3 (98-175)||(6419692-6419769)
chr3 (98-175)||(48191118-48191195)
chr3 (96-175)||(43904522-43904601)
chr3 (98-175)||(24273907-24273984)
chr3 (98-175)||(6083169-6083245)
chr3 (98-135)||(25118773-25118810)
chr3 (98-175)||(44107405-44107481)
[»] scaffold0548 (1 HSPs)
scaffold0548 (97-158)||(6771-6832)
[»] chr6 (5 HSPs)
chr6 (96-135)||(24571684-24571723)
chr6 (98-175)||(12795046-12795123)
chr6 (97-177)||(1266766-1266847)
chr6 (98-131)||(2746473-2746506)
chr6 (98-130)||(21513096-21513128)
[»] scaffold0515 (1 HSPs)
scaffold0515 (98-175)||(2502-2579)
[»] scaffold0457 (1 HSPs)
scaffold0457 (98-175)||(6803-6880)
[»] scaffold0306 (1 HSPs)
scaffold0306 (98-175)||(2502-2579)
[»] scaffold0242 (2 HSPs)
scaffold0242 (98-158)||(15082-15143)
scaffold0242 (98-158)||(23917-23978)


Alignment Details
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 23757418 - 23757473
Alignment:
Q  175 tgaacgcaccaattctccaatcctgctattaacgttgccaagatttcctctgcttt 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23757418 tgaacgcaccaattctccaatcctgctattaacgttgccaagatttcctctgcttt 23757473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 95 - 175
Target Start/End: Complemental strand, 25219743 - 25219663
Alignment:
Q  95 taaaaaatgtcgaaattgttaggccggatgtaatgaccaggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    |||||||||||||||||||||||||||| || |||||  | ||| ||||   |||||||||||||||||||||||||||||    
T  25219743 taaaaaatgtcgaaattgttaggccggacgtcatgacgggattcgaactcaggtacctccactttatatgtgtgagtttat 25219663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 10202194 - 10202271
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatga-ccaggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    |||||||||||||||||||||||||||  |||| |  ||||| ||||||||||||||||| ||||||||||||||||||    
T  10202194 aaaatgtcgaaattgttaggccggatgctatgatcggggttcgaacttcagtacctccac-ttatatgtgtgagtttat 10202271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 32517937 - 32517842
Alignment:
Q  82 ctagttcaactgttaaaaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttatga 177  Q
    |||||||||||| |||||| ||||||||||||||||| ||| || |||||| |||||| |||  | ||||||||||||| | |||||||||||||||    
T  32517937 ctagttcaactgataaaaa-tgtcgaaattgttaggctggacgtcatgaccgaggttcgaaccccggtacctccactttgtgtgtgtgagtttatga 32517842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 39417474 - 39417546
Alignment:
Q  105 cgaaattgttaggccggatgtaatgaccaggttcaaacttcagtacctccactttatatgtgtgagtttatga 177  Q
    ||||||||||||||||||||| |||||  ||||| |||| |  || ||||||||||| |||||||||||||||    
T  39417474 cgaaattgttaggccggatgtcatgacggggttcgaactccgatatctccactttatgtgtgtgagtttatga 39417546  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 44948043 - 44948120
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    |||||||||||||||||||||||||||  ||||||  ||||| |||| | |||||||||| || |||||||||||||||    
T  44948043 aaaatgtcgaaattgttaggccggatgccatgaccggggttcgaactccggtacctccac-ttgtatgtgtgagtttat 44948120  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 20571064 - 20571032
Alignment:
Q  36 atccatttcacccttaattaagatgtacaaatt 68  Q
    |||||||||||||||||||||||||||||||||    
T  20571064 atccatttcacccttaattaagatgtacaaatt 20571032  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 5887603 - 5887669
Alignment:
Q  109 attgttaggccggatgtaatgacca-ggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    ||||||||||||||||| ||||||| ||||| ||||   |||||||||| ||||||||||||||||||    
T  5887603 attgttaggccggatgtcatgaccagggttcgaactctggtacctccac-ttatatgtgtgagtttat 5887669  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 25219962 - 25219867
Alignment:
Q  82 ctagttcaactgttaaaaaatgtcgaaattgttaggccggatgtaatgaccaggttcaaacttcagtacctccactttatatgtgtgagtttatga 177  Q
    |||| |||| || ||||||||| ||||||||||||| |||| || |||||  ||||||||   |  |||||||||||||| ||||||| |||||||    
T  25219962 ctagctcaattgataaaaaatgccgaaattgttaggtcggacgtcatgacggggttcaaatcccgatacctccactttatgtgtgtgaatttatga 25219867  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 132
Target Start/End: Original strand, 33898254 - 33898289
Alignment:
Q  97 aaaaatgtcgaaattgttaggccggatgtaatgacc 132  Q
    ||||||||||||||||||||||||||||| ||||||    
T  33898254 aaaaatgtcgaaattgttaggccggatgtcatgacc 33898289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 45049409 - 45049443
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgacc 132  Q
    |||||||||||||||||||||||||||| ||||||    
T  45049409 aaaatgtcgaaattgttaggccggatgtcatgacc 45049443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 636987 - 637068
Alignment:
Q  97 aaaaatgtcgaaattgttaggccggatgtaatga-ccaggttcaaacttcagtacctccactttatatgtgtgagtttatga 177  Q
    |||||||||||||||||||| ||||| || ||||    ||||||||| || || |||||||||| | |||||||||||||||    
T  636987 aaaaatgtcgaaattgttagaccggacgttatgattggggttcaaacatctgttcctccactttgtgtgtgtgagtttatga 637068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 16535061 - 16535015
Alignment:
Q  82 ctagttcaactgttaaaaaatgtcgaaattgttaggccggatgtaatga 130  Q
    |||||||||||| |||||  |||||||||||||||||||||||| ||||    
T  16535061 ctagttcaactgataaaa--tgtcgaaattgttaggccggatgtcatga 16535015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 177
Target Start/End: Complemental strand, 18741503 - 18741422
Alignment:
Q  97 aaaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttatga 177  Q
    ||||||| ||||||||||||| || |  | |||| | ||||||||||| | ||||||||||||| | |||||||||||||||    
T  18741503 aaaaatgccgaaattgttaggtcgaacatcatgatcgaggttcaaactccggtacctccactttgtgtgtgtgagtttatga 18741422  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 7607345 - 7607309
Alignment:
Q  97 aaaaatgtcgaaattgttaggccggatgtaatgacca 133  Q
    ||||||||||||||||||||||||||||  |||||||    
T  7607345 aaaaatgtcgaaattgttaggccggatgccatgacca 7607309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 8859391 - 8859359
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatga 130  Q
    |||||||||||||||||||||||||||| ||||    
T  8859391 aaaatgtcgaaattgttaggccggatgtcatga 8859359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 13491057 - 13491129
Alignment:
Q  105 cgaaattgttaggccggatgtaatgaccagg-ttcaaacttcagtacctccactttatatgtgtgagtttatg 176  Q
    ||||||||||| |||||| || |||||| || ||| ||| ||| |||||||||||| | ||||||||||||||    
T  13491057 cgaaattgttatgccggacgtcatgaccggggttcgaacctcaatacctccactttgtgtgtgtgagtttatg 13491129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 173
Target Start/End: Original strand, 18779935 - 18780010
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgaccagg-ttcaaacttcagtacctccactttatatgtgtgagttt 173  Q
    |||||||||||||||||||| ||||||  ||||||||| ||| |||  | |||||||||| |||| |||||||||||    
T  18779935 aaaatgtcgaaattgttaggtcggatgccatgaccaggcttcgaaccacggtacctccac-ttatgtgtgtgagttt 18780010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 23957076 - 23957108
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatga 130  Q
    |||||||||||||||||||||||||||| ||||    
T  23957076 aaaatgtcgaaattgttaggccggatgtcatga 23957108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 74 - 177
Target Start/End: Complemental strand, 12645425 - 12645322
Alignment:
Q  74 cataaattctagttcaactgttaaaaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtt 172  Q
    ||||| ||||||||||||||  ||||| ||||||||||||||||||||| ||||||||| |||||| |||  | ||||||||||||||| |||||| |||    
T  12645425 cataagttctagttcaactgccaaaaa-tgtcgaaattgttaggccggacgtaatgaccgaggttcgaacccctgtacctccactttatgtgtgtgggtt 12645327  T
Q  173 tatga 177  Q
    |||||    
T  12645326 tatga 12645322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 47459440 - 47459486
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaact 143  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||    
T  47459440 aaaatgtcgaaattgttaggccggatgtcatgaccgaggttcaaact 47459486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 9380015 - 9380076
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactt 158  Q
    |||||||||||||||||||||||||||| ||||||  ||||| |||  ||||||||||||||    
T  9380015 aaaatgtcgaaattgttaggccggatgtcatgaccggggttcgaaccccagtacctccactt 9380076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 177
Target Start/End: Complemental strand, 9506947 - 9506866
Alignment:
Q  97 aaaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttatga 177  Q
    |||||| || ||||||||||||||||  | |||||| |||||| |||| | ||||||||||||| | |||||||||||||||    
T  9506947 aaaaatatcaaaattgttaggccggacatcatgaccgaggttcgaactccggtacctccactttgtgtgtgtgagtttatga 9506866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 177
Target Start/End: Complemental strand, 46021536 - 46021455
Alignment:
Q  97 aaaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttatga 177  Q
    ||||||| ||||||||||||||||||||| ||||||  ||||| |||  | ||||||||| ||| | |||||||||||||||    
T  46021536 aaaaatgccgaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctccattttgtgtgtgtgagtttatga 46021455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 2228184 - 2228150
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgacc 132  Q
    |||||||||||||||||||||||||||| ||||||    
T  2228184 aaaatgtcgaaattgttaggccggatgtcatgacc 2228150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 31717321 - 31717398
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    |||||| ||||||||||||||||||||  ||||||  ||||| |||| | |||||||||| |||| |||||||||||||    
T  31717321 aaaatgccgaaattgttaggccggatgccatgaccggggttcgaactccggtacctccac-ttatgtgtgtgagtttat 31717398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 35157188 - 35157111
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    |||||| ||||||||||||||||||||| ||||||  ||||| |||  | |||||||||| |||| |||||||||||||    
T  35157188 aaaatgccgaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctccac-ttatgtgtgtgagtttat 35157111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 3861440 - 3861408
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatga 130  Q
    |||||||||||||||||||||||||||| ||||    
T  3861440 aaaatgtcgaaattgttaggccggatgtcatga 3861408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 10166894 - 10166954
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgaccaggttcaaacttcagtacctccactt 158  Q
    |||||| ||||||||||||||||||||  |||||| ||||| ||||   ||||||||||||    
T  10166894 aaaatgccgaaattgttaggccggatgccatgaccgggttcgaactctggtacctccactt 10166954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 170
Target Start/End: Complemental strand, 37938184 - 37938097
Alignment:
Q  83 tagttcaactgttaaaaaatgtcgaaattgttaggccggatgtaatgaccag-gttcaaacttcagtacctccactttatatgtgtgag 170  Q
    ||||||||||| |||||| ||| |||||||||||| | || || |||| | | |||||||| ||| |||||||||||||| ||||||||    
T  37938184 tagttcaactggtaaaaa-tgttgaaattgttaggtcagacgtcatgatcggtgttcaaacatcaatacctccactttatgtgtgtgag 37938097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 97 - 175
Target Start/End: Original strand, 43837111 - 43837188
Alignment:
Q  97 aaaaatgtcgaaattgttaggccggatgtaatgaccaggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||  | ||||||||||||||| ||||| |||||||    
T  43837111 aaaaatgtcggaattgttaggccggatgttatgaccaggttcaaac-ccggtacctccactttatgtgtgtaagtttat 43837188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 13116949 - 13117030
Alignment:
Q  97 aaaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttatga 177  Q
    |||||||||||||||||||||| ||| || |||||| |||||| |||| | |||||| |||||| | |||||||||||||||    
T  13116949 aaaaatgtcgaaattgttaggctggacgtcatgaccaaggttcgaactccggtaccttcactttgtgtgtgtgagtttatga 13117030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 27078572 - 27078651
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttatga 177  Q
    |||||||||||||||||||||||||||| ||||||  ||||| |||  | |||||||||| |||| |||||||||||||||    
T  27078572 aaaatgtcgaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctccac-ttatgtgtgtgagtttatga 27078651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 43025896 - 43025971
Alignment:
Q  82 ctagttcaactgttaaaaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactt 158  Q
    ||||||||||||  | ||||| |||||||||||||||||||||  ||||||  ||||| |||||||||||||||||||    
T  43025896 ctagttcaactg--acaaaatatcgaaattgttaggccggatgccatgacctgggttcgaacttcagtacctccactt 43025971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 177
Target Start/End: Complemental strand, 37186944 - 37186841
Alignment:
Q  74 cataaattctagttcaactgttaaaaaatgtcgaaattgttaggccggatgtaatgacca-ggttcaaacttcagtacctccactttatatgtgtgagtt 172  Q
    ||||| |||||| ||||||| |||||| || ||||||||||| |||||| || ||||||| ||||| ||||   ||||||||||||| | ||| ||||||    
T  37186944 cataagttctagctcaactggtaaaaa-tgccgaaattgttaagccggacgtcatgaccagggttcgaactctggtacctccactttgtgtgtttgagtt 37186846  T
Q  173 tatga 177  Q
    |||||    
T  37186845 tatga 37186841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 45007795 - 45007719
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    ||||| |||||||||||||||||||||| |||||| |||||| |||  |||||||||  | |||| |||||||||||||    
T  45007795 aaaatatcgaaattgttaggccggatgtcatgaccgaggttcgaaccccagtacctc--ccttatgtgtgtgagtttat 45007719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 236593 - 236672
Alignment:
Q  97 aaaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttatga 177  Q
    |||||||||||||||||||||||||| || ||||||  ||||| |||  | |||||| |||||  |||||||||||||||||    
T  236593 aaaaatgtcgaaattgttaggccggacgtcatgaccggggttcgaaccccggtaccttcactt--tatgtgtgagtttatga 236672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 39787754 - 39787677
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    ||||||||||||||||||| ||| |||  ||||||  ||||| |||| | |||||||||| ||||||||||||||||||    
T  39787754 aaaatgtcgaaattgttagaccgaatgccatgaccggggttcgaactccggtacctccac-ttatatgtgtgagtttat 39787677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 48391980 - 48392057
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgacca-ggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    |||||| ||||||||||||||||||||  ||||||| ||||| |||  | |||||||||| |||| |||||||||||||    
T  48391980 aaaatgccgaaattgttaggccggatgccatgaccagggttcgaaccccggtacctccac-ttatgtgtgtgagtttat 48392057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 49948265 - 49948342
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgaccagg-ttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    |||||||||||||||||||||||||||  |||||| || ||| |||  |||||||||||| || | |||||||||||||    
T  49948265 aaaatgtcgaaattgttaggccggatgccatgaccgggattcgaaccccagtacctccac-ttgtgtgtgtgagtttat 49948342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 50248053 - 50248087
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgacc 132  Q
    |||||||||||||||||||||||||||| ||||||    
T  50248053 aaaatgtcgaaattgttaggccggatgtcatgacc 50248087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 40241512 - 40241573
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgaccag-gttcaaacttcagtacctccactt 158  Q
    |||||||||||||||||||||||||| | |||||| | |||| ||| || ||||||||||||    
T  40241512 aaaatgtcgaaattgttaggccggatatcatgaccggagttcgaacctcggtacctccactt 40241573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 176
Target Start/End: Complemental strand, 8312633 - 8312553
Alignment:
Q  97 aaaaatgtcgaaattgttaggccggatgtaatga-ccaggttcaaacttcagtacctccactttatatgtgtgagtttatg 176  Q
    |||||||||||||||||||||||| | || |||| | |||||| |||  | ||||||||||||| | || |||||||||||    
T  8312633 aaaaatgtcgaaattgttaggccgaacgttatgatcgaggttcgaaccccggtacctccactttgtgtgagtgagtttatg 8312553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 173
Target Start/End: Complemental strand, 11797503 - 11797428
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgaccagg-ttcaaacttcagtacctccactttatatgtgtgagttt 173  Q
    ||||||||||||||||||||||| |||| |||||| || ||| ||| |  |||||||||| |||| |||||||||||    
T  11797503 aaaatgtcgaaattgttaggccgaatgtcatgaccgggattcgaacattggtacctccac-ttatgtgtgtgagttt 11797428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 175
Target Start/End: Complemental strand, 13048930 - 13048834
Alignment:
Q  77 aaattctagttcaactgttaaaaaatgtcgaaattgttaggccggatgtaatgaccag-gttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    |||| |||||||||||| ||||| ||  ||||||||||||||||||||| |||| | | |||| |||  | ||||||||| ||||| |||||||||||||    
T  13048930 aaatcctagttcaactggtaaaatat--cgaaattgttaggccggatgtcatgatcggagttcgaaccccggtacctcca-tttatgtgtgtgagtttat 13048834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 175
Target Start/End: Complemental strand, 13053927 - 13053831
Alignment:
Q  77 aaattctagttcaactgttaaaaaatgtcgaaattgttaggccggatgtaatgaccag-gttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    |||| |||||||||||| ||||| ||  ||||||||||||||||||||| |||| | | |||| |||  | ||||||||| ||||| |||||||||||||    
T  13053927 aaatcctagttcaactggtaaaatat--cgaaattgttaggccggatgtcatgatcggagttcgaaccccggtacctcca-tttatgtgtgtgagtttat 13053831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 36018902 - 36018934
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatga 130  Q
    |||||||||||||||||||||||||||| ||||    
T  36018902 aaaatgtcgaaattgttaggccggatgtcatga 36018934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 24870620 - 24870701
Alignment:
Q  97 aaaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttatga 177  Q
    ||||||| |||||||||||||||||| ||||||||| |||||| ||| || ||||||||||||||  |||||||||||||||    
T  24870620 aaaaatgccgaaattgttaggccggacgtaatgaccgaggttcgaacctcggtacctccactttacgtgtgtgagtttatga 24870701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 33530242 - 33530323
Alignment:
Q  97 aaaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttatga 177  Q
    |||||||| ||||||||||||||||| || |||||| |||||||||| |||||||||| ||||| | |||||||||||||||    
T  33530242 aaaaatgttgaaattgttaggccggacgtcatgaccgaggttcaaacctcagtacctctactttgtgtgtgtgagtttatga 33530323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 37340226 - 37340132
Alignment:
Q  82 ctagttcaactgttaaaaaatgtcgaaattgttaggccggatgtaatgaccaggttcaaacttcagtacctccactttatatgtgtgagtttatga 177  Q
    |||||||||||| |||||| ||||||||||||||||||| | || |||| ||||||| |||  | ||| ||||||||| | |||||||||||||||    
T  37340226 ctagttcaactgataaaaa-tgtcgaaattgttaggccgaacgtcatgatcaggttcgaaccacggtatctccactttgtgtgtgtgagtttatga 37340132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 175
Target Start/End: Original strand, 13632113 - 13632191
Alignment:
Q  97 aaaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    ||||||||||||||||||||||||||||  |||||| |||||| |||  |||||||||||| || | |||||||||||||    
T  13632113 aaaaatgtcgaaattgttaggccggatgccatgaccgaggttcgaaccccagtacctccac-ttgtgtgtgtgagtttat 13632191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 11311631 - 11311570
Alignment:
Q  97 aaaaatgtcgaaattgttaggccggatgtaatgaccaggttcaaacttcagtacctccactt 158  Q
    ||||||| ||||||||||||||||||||| |||||  ||||| |||| | ||||||||||||    
T  11311631 aaaaatgccgaaattgttaggccggatgtcatgacggggttcgaactccggtacctccactt 11311570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 42550524 - 42550449
Alignment:
Q  101 atgtcgaaattgttaggccggatgtaatgaccagg-ttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    ||||| ||||||||||||||||||  |||||| || ||| ||   ||||||||||||||||||||||| |||||||    
T  42550524 atgtcaaaattgttaggccggatgccatgaccgggattcgaatcccagtacctccactttatatgtgtaagtttat 42550449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 579346 - 579269
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatga-ccaggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    |||||||||||||||||||||||||||| |||| |  ||||| |||  | |||||||||| |||| |||||||||||||    
T  579346 aaaatgtcgaaattgttaggccggatgtcatgatcggggttcgaaccccggtacctccac-ttatgtgtgtgagtttat 579269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 1052987 - 1052953
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgacc 132  Q
    |||||||||||||||||||||||||||| ||||||    
T  1052987 aaaatgtcgaaattgttaggccggatgtcatgacc 1052953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 175
Target Start/End: Original strand, 28758378 - 28758479
Alignment:
Q  74 cataaattctagttcaactgttaaaaaatgtcgaaattgttaggccggatgtaatgaccag-gttcaaacttcagtacctccactttatatgtgtgagtt 172  Q
    ||||||| ||||||||||||  ||||| || ||||||| ||||| |||| || |||||| | |||| |||  ||||||||||||||| | ||||||||||    
T  28758378 cataaatcctagttcaactggcaaaaa-tgccgaaattattaggtcggacgtcatgaccggagttcgaaccccagtacctccactttgtgtgtgtgagtt 28758476  T
Q  173 tat 175  Q
    |||    
T  28758477 tat 28758479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 46488221 - 46488144
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    |||||| ||||||||||||||||||||| ||||||  |||||||||  | |||||||||| || | |||||||||||||    
T  46488221 aaaatgccgaaattgttaggccggatgtcatgaccggggttcaaaccccggtacctccac-ttgtgtgtgtgagtttat 46488144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 177
Target Start/End: Complemental strand, 9696397 - 9696316
Alignment:
Q  97 aaaaatgtcgaaattgttaggccggatgtaatgaccagg-ttcaaacttcagtacctccactttatatgtgtgagtttatga 177  Q
    ||||||||||||||||||||| || | || |||| | || ||| ||| || ||||||||||||||| ||||| |||||||||    
T  9696397 aaaaatgtcgaaattgttaggtcgaacgttatgatcggggttcgaacctcggtacctccactttatgtgtgtaagtttatga 9696316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 28187268 - 28187207
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatga-ccaggttcaaacttcagtacctccactt 158  Q
    |||||||||||||||||||||||||||  |||| |  ||||| |||| ||||||||||||||    
T  28187268 aaaatgtcgaaattgttaggccggatgctatgatcggggttcgaactccagtacctccactt 28187207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 47384222 - 47384259
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgaccagg 135  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  47384222 aaaatgtcggaattgttaggccggatgtcatgaccagg 47384259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 42559933 - 42559856
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatga-ccaggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    ||||||||||||||||||||||||||||||||| | ||||||||| | | |||||||||| |||| |||||||||||||    
T  42559933 aaaatgtcgaaattgttaggccggatgtaatgatcgaggttcaaattccggtacctccac-ttatgtgtgtgagtttat 42559856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 26526544 - 26526617
Alignment:
Q  105 cgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttatga 177  Q
    |||||||||||||||| | || |||||| |||||| |||| | ||||||||||||||| |||||||||||||||    
T  26526544 cgaaattgttaggccgaacgtcatgaccgaggttcgaactccggtacctccactttatgtgtgtgagtttatga 26526617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 175
Target Start/End: Complemental strand, 4430064 - 4429968
Alignment:
Q  77 aaattctagttcaactgttaaaaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    ||||||||| ||||||| |||||  |||||||||||||||||||||||| ||||||  |||||||||  |  ||||||||| |||| |||||||||||||    
T  4430064 aaattctagctcaactggtaaaa--tgtcgaaattgttaggccggatgtcatgaccggggttcaaaccccgatacctccac-ttatgtgtgtgagtttat 4429968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 10109996 - 10109934
Alignment:
Q  97 aaaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactt 158  Q
    ||||||||||| ||||||||||||||||| |||||| |||||| ||| || ||||||||||||    
T  10109996 aaaaatgtcgatattgttaggccggatgtcatgaccgaggttcgaacctcggtacctccactt 10109934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 27390031 - 27389954
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    |||||| ||||||||||||||||||||  ||||||  ||||| ||| || |||||||||| |||| |||||||||||||    
T  27390031 aaaatgccgaaattgttaggccggatgccatgaccggggttcgaacctcggtacctccac-ttatgtgtgtgagtttat 27389954  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 36259821 - 36259855
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgacc 132  Q
    |||||||||||||||||||||||||||| ||||||    
T  36259821 aaaatgtcgaaattgttaggccggatgtcatgacc 36259855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 11968800 - 11968861
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactt 158  Q
    |||||||||||||||||||||||||||  ||||||  ||||| |||  ||||||||||||||    
T  11968800 aaaatgtcgaaattgttaggccggatgccatgaccggggttcgaaccccagtacctccactt 11968861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 177
Target Start/End: Original strand, 1271129 - 1271201
Alignment:
Q  106 gaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttatga 177  Q
    |||||| ||| ||||||||| |||||| |||||| ||   || |||||||| |||||||||||||||||||||    
T  1271129 gaaattattaagccggatgttatgaccgaggttcgaatcccaatacctccattttatatgtgtgagtttatga 1271201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 124
Target Start/End: Complemental strand, 15067246 - 15067218
Alignment:
Q  96 aaaaaatgtcgaaattgttaggccggatg 124  Q
    |||||||||||||||||||||||||||||    
T  15067246 aaaaaatgtcgaaattgttaggccggatg 15067218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 177
Target Start/End: Complemental strand, 39709755 - 39709648
Alignment:
Q  70 gtcccataaattctagttcaactgttaaaaaatgtcgaaattgttaggccggatgtaatgaccagg-ttcaaacttcagtacctccactttatatgtgtg 168  Q
    ||||||||| |||||| ||||||| |||||| ||||||||||||||| ||||| ||  ||||  || ||||||||    |||||||||||||||||||||    
T  39709755 gtcccataagttctagctcaactgctaaaaa-tgtcgaaattgttagaccggacgtcgtgactggggttcaaactctgatacctccactttatatgtgtg 39709657  T
Q  169 agtttatga 177  Q
    |||||||||    
T  39709656 agtttatga 39709648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 5917305 - 5917343
Alignment:
Q  97 aaaaatgtcgaaattgttaggccggatgtaatgaccagg 135  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  5917305 aaaaatgtcgaaactgttaggccggatgtcatgaccagg 5917343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 175
Target Start/End: Complemental strand, 38216872 - 38216782
Alignment:
Q  83 tagttcaactgttaaaaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    |||||||||||  |||||||| ||||||||||||||| ||||| ||||||  |||||||||| |  || |||||| |||| |||||||||||||    
T  38216872 tagttcaactg--aaaaaatgccgaaattgttaggccagatgtcatgaccggggttcaaactccgataactccac-ttatgtgtgtgagtttat 38216782  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 2442786 - 2442847
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgaccagg-ttcaaacttcagtacctccactt 158  Q
    |||||||||||||||||||||||||||  |||||| || |||||||  | ||||||||||||    
T  2442786 aaaatgtcgaaattgttaggccggatgccatgaccgggattcaaaccccggtacctccactt 2442847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 11021360 - 11021441
Alignment:
Q  97 aaaaatgtcgaaattgttaggccggatgtaatgaccag-gttcaaacttcagtacctccactttatatgtgtgagtttatga 177  Q
    ||||||||||||||| ||||| |||| || |||||| | |||| |||  | ||||||||||||| | |||||||||||||||    
T  11021360 aaaaatgtcgaaattattaggtcggacgtcatgacctgagttcgaaccccggtacctccactttgtgtgtgtgagtttatga 11021441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 7882894 - 7882957
Alignment:
Q  111 tgttaggccggatgtaatgaccaggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    ||||||||||||||| |||||||||||| ||||   |||||| ||| |||| |||||||||||||    
T  7882894 tgttaggccggatgtgatgaccaggttcgaactctggtaccttcac-ttatgtgtgtgagtttat 7882957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 40999754 - 40999803
Alignment:
Q  73 ccataaattctagttcaactgttaaaaaatgtcgaaattgttaggccggatg 124  Q
    ||||||||| ||| ||||||| |||||  |||||||||||||||||||||||    
T  40999754 ccataaattttagctcaactgataaaa--tgtcgaaattgttaggccggatg 40999803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 6419769 - 6419692
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgaccag-gttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    |||||||||||||||||||||||||||| |||||||| |||| |||  | ||||| |||| || |||||||||||||||    
T  6419769 aaaatgtcgaaattgttaggccggatgtcatgaccagcgttcgaaccgcggtacccccac-ttgtatgtgtgagtttat 6419692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 48191118 - 48191195
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    |||||| ||||||||||||||||||||| ||||||  ||||| |||| |||||||||||| || | |||||||||||||    
T  48191118 aaaatgccgaaattgttaggccggatgtcatgaccggggttcgaactccagtacctccac-ttgtgtgtgtgagtttat 48191195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 43904601 - 43904522
Alignment:
Q  96 aaaaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    |||||||||||||||||||||||||||||  ||||||  |||||||||    ||||||||| ||||| |||||||||||||    
T  43904601 aaaaaatgtcgaaattgttaggccggatgccatgaccggggttcaaaccctggtacctcca-tttatgtgtgtgagtttat 43904522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 24273984 - 24273907
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgacca-ggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    |||||| ||||||||||||||||||||  ||||| | ||||| |||||| |||||||||| || | |||||||||||||    
T  24273984 aaaatgccgaaattgttaggccggatgccatgactagggttcgaacttcggtacctccac-ttgtgtgtgtgagtttat 24273907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 6083245 - 6083169
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgaccaggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    |||||| |||||||||||||||||||   |||||| ||||| |||| | |||||||||| || | |||||||||||||    
T  6083245 aaaatgccgaaattgttaggccggataccatgaccgggttcgaactccggtacctccac-ttgtgtgtgtgagtttat 6083169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 25118810 - 25118773
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgaccagg 135  Q
    |||||||||||||||||||||||||||  |||||||||    
T  25118810 aaaatgtcgaaattgttaggccggatgccatgaccagg 25118773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 44107405 - 44107481
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgaccaggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    ||||||| |||||||||||||||||||  |||||| || || ||| || |||||||||| || | |||||||||||||    
T  44107405 aaaatgttgaaattgttaggccggatgccatgaccggggtcgaacctcggtacctccac-ttgtgtgtgtgagtttat 44107481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 6771 - 6832
Alignment:
Q  97 aaaaatgtcgaaattgttaggccggatgtaatgaccaggttcaaacttcagtacctccactt 158  Q
    ||||||| ||||||||||||||||||||| |||||  ||||| |||| | ||||||||||||    
T  6771 aaaaatgccgaaattgttaggccggatgtcatgacggggttcgaactccggtacctccactt 6832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 135
Target Start/End: Complemental strand, 24571723 - 24571684
Alignment:
Q  96 aaaaaatgtcgaaattgttaggccggatgtaatgaccagg 135  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  24571723 aaaaaatgtcgaaattgttaggccagatgtcatgaccagg 24571684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 12795123 - 12795046
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    |||||| ||||||||||||||||||||| ||||||  ||||| |||  | |||||||||| |||| |||||||||||||    
T  12795123 aaaatgccgaaattgttaggccggatgtcatgaccggggttcgaaccgcggtacctccac-ttatgtgtgtgagtttat 12795046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 177
Target Start/End: Complemental strand, 1266847 - 1266766
Alignment:
Q  97 aaaaatgtcgaaattgttaggccggatgtaatgaccagg-ttcaaacttcagtacctccactttatatgtgtgagtttatga 177  Q
    ||||||| |||||||||||||||||| || |||| | || |||  || |||||||||||| ||| | |||||||||||||||    
T  1266847 aaaaatgccgaaattgttaggccggacgtcatgatcggggttcggacctcagtacctccattttgtgtgtgtgagtttatga 1266766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 131
Target Start/End: Original strand, 2746473 - 2746506
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgac 131  Q
    |||||||||||||||||||||||||||| |||||    
T  2746473 aaaatgtcgaaattgttaggccggatgtcatgac 2746506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 21513096 - 21513128
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatga 130  Q
    |||||||||||||||||||||||||||| ||||    
T  21513096 aaaatgtcgaaattgttaggccggatgtcatga 21513128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 2502 - 2579
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    |||||||||||||||||||||||||||  ||||||  ||||| |||  | |||||||||| |||| |||||||||||||    
T  2502 aaaatgtcgaaattgttaggccggatgctatgaccggggttcgaaccccggtacctccac-ttatgtgtgtgagtttat 2579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0457 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0457
Description:

Target: scaffold0457; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 6803 - 6880
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    |||||| ||||||||||||||||||||| ||||||  ||||| |||| | |||||||||| |||| ||||||| |||||    
T  6803 aaaatgccgaaattgttaggccggatgtcatgaccggggttcgaactccggtacctccac-ttatgtgtgtgaatttat 6880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 2502 - 2579
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactttatatgtgtgagtttat 175  Q
    |||||||||||||||||||||||||||  ||||||  ||||| |||  | |||||||||| |||| |||||||||||||    
T  2502 aaaatgtcgaaattgttaggccggatgctatgaccggggttcgaaccccggtacctccac-ttatgtgtgtgagtttat 2579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 15082 - 15143
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactt 158  Q
    |||||| |||||||||||||||| |||| |||||| |||||| ||| || ||||||||||||    
T  15082 aaaatgccgaaattgttaggccgaatgtcatgaccgaggttcgaacctctgtacctccactt 15143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 23917 - 23978
Alignment:
Q  98 aaaatgtcgaaattgttaggccggatgtaatgacc-aggttcaaacttcagtacctccactt 158  Q
    |||||| |||||||||||||||| |||| |||||| |||||| ||| || ||||||||||||    
T  23917 aaaatgccgaaattgttaggccgaatgtcatgaccgaggttcgaacctctgtacctccactt 23978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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