View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7031_low_8 (Length: 258)
Name: NF7031_low_8
Description: NF7031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7031_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 241
Target Start/End: Original strand, 9263422 - 9263659
Alignment:
| Q |
7 |
gattattcttgatcaaataagtctgcaagatgaattgtgtttaacttgtaaagtttaagaaactaa---ttgaaaaacagaatatgacttggcactcccc |
103 |
Q |
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| T |
9263422 |
gattcttcttgatcaaataagtctgcaagatgaattgtggttaacttgtaaagtttaagaaactaaaaattgaaaaacagaatatgacttggcacttacc |
9263521 |
T |
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| Q |
104 |
aatgcagcttcgatgcaaaaacttgtcgctcctttcagcaactctaccgcaatgctccgatgaagcgagcggtagcatccctggatgctttccaccgtga |
203 |
Q |
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| T |
9263522 |
aatgcagctccgatgcaaaaacttgtcgctcctttcagcaactctaccgcaatgctccgacgaagcgagcggtagaatccctggatgctttccaccgtga |
9263621 |
T |
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| Q |
204 |
gaggagttgtggttggaggagctggtggtggttgctgt |
241 |
Q |
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| T |
9263622 |
gaggagttgtggttggaggagctgctggtggtggctgt |
9263659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 241
Target Start/End: Original strand, 9267701 - 9267939
Alignment:
| Q |
7 |
gattattcttgatcaaataagtctgcaagatgaattgtgt-ttaacttgtaaagtttaagaaactaa---ttgaaaaacagaatatgacttggcactccc |
102 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
9267701 |
gattcttcttgatcaaataagtctgcaagatgaattgtgagttaacttgtaaagtttaagaaactaaaaattgaaaaacagaatatgacttggcactcac |
9267800 |
T |
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| Q |
103 |
caatgcagcttcgatgcaaaaacttgtcgctcctttcagcaactctaccgcaatgctccgatgaagcgagcggtagcatccctggatgctttccaccgtg |
202 |
Q |
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| T |
9267801 |
caatgcagctccgatgcaaaaacttgtcgctcctttcagcaactctcccccaatgctccgacgaagcgagcggtagcatccctggatgctttccaccgtg |
9267900 |
T |
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| Q |
203 |
agaggagttgtggttggaggagctggtggtggttgctgt |
241 |
Q |
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| T |
9267901 |
acaggagttgtggttggaggagctggtggtggttgctgt |
9267939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 7 - 241
Target Start/End: Complemental strand, 9263203 - 9262965
Alignment:
| Q |
7 |
gattattcttgatcaaataagtctgcaagatgaattgtgt-ttaacttgtaaagtttaagaaactaa---ttgaaaaacagaatatgacttggcactccc |
102 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||| ||||||||| | |
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| T |
9263203 |
gattcttcttgatcaaataagtctgcaagatgaattgtgagttaacttgtaaagtttaagaaactaaaaattaaaaaacagaatatgaattggcactcac |
9263104 |
T |
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| Q |
103 |
caatgcagcttcgatgcaaaaacttgtcgctcctttcagcaactctaccgcaatgctccgatgaagcgagcggtagcatccctggatgctttccaccgtg |
202 |
Q |
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||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||| |
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| T |
9263103 |
caatgtagctcggatgaaaaaacttgtcgctcctttcagcaactctaccgcaatgctccgacaaagcgagcggtagcatccctggattcttttcaccgtg |
9263004 |
T |
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| Q |
203 |
agaggagttgtggttggaggagctggtggtggttgctgt |
241 |
Q |
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| T |
9263003 |
agaggagttgtggttggaggagctgctagtggtggctgt |
9262965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 115 - 241
Target Start/End: Complemental strand, 9267625 - 9267499
Alignment:
| Q |
115 |
gatgcaaaaacttgtcgctcctttcagcaactctaccgcaatgctccgatgaagcgagcggtagcatccctggatgctttccaccgtgagaggagttgtg |
214 |
Q |
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||||||||||||||||||||||||||| |||||| |||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9267625 |
gatgcaaaaacttgtcgctcctttcagtaactcttccgcaatgcttcgactaagcgagcggtagcatccctggatgctttccaccttgagaggagttgtg |
9267526 |
T |
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| Q |
215 |
gttggaggagctggtggtggttgctgt |
241 |
Q |
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| T |
9267525 |
gttggaggagctgctggtggtggctgt |
9267499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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