View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7032_high_1 (Length: 601)
Name: NF7032_high_1
Description: NF7032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7032_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 21 - 309
Target Start/End: Complemental strand, 44858972 - 44858684
Alignment:
| Q |
21 |
actccaactgctgagatacctcagtcgaaccaggttcaatcggcattgtaagaaacaccaaaaccttaactgaaaatttcaacaacaaaaataaaactca |
120 |
Q |
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| T |
44858972 |
actccaactgctgagatacctcagtcgaaccaggttcaatcggcattgtaagaaacaccaaaaccttaactgaaaatttcaacaacaaaaataaaactca |
44858873 |
T |
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| Q |
121 |
acaccaactaatccaatgaatcaaatctcaaacagaaaatttactcaatttttataaacttaaacctgcattgagaagcatgctacgatcttggtggtaa |
220 |
Q |
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| T |
44858872 |
acaccaaccaatccaatgaatcaaatctcaaacagaaaatttactcaatttttataaacttaaacctgcattgagaagcatgctacgatcttggtggtaa |
44858773 |
T |
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| Q |
221 |
tgctctataatcggtaccaaatcctttgaaacgatgttccatttacacacttgcttgaacacatcgcgggattgcggatcatcacgtct |
309 |
Q |
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| T |
44858772 |
tgctctataatcggtaccaaatcctttgaaacgatgttccatttacacactagcttgaacacatcgcgggattgcggatcatcacgtct |
44858684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 431 - 589
Target Start/End: Complemental strand, 44858562 - 44858404
Alignment:
| Q |
431 |
caaattcattcataccgagacagtattcacccttggaataaccgattcgtttgccttcatcatcttcttcaatggcgccgagaccgctgcagattaggga |
530 |
Q |
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| T |
44858562 |
caaattcattcataccgagacagtattcacccttggaataaccgattcgtttgccttcatcatcttcttcaatggcgccgagaccgctgcagattaggga |
44858463 |
T |
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| Q |
531 |
taatccatcggtgtccatggtgtttgggttttgagagaacgaagagatttggggatttt |
589 |
Q |
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| T |
44858462 |
taatccatcggtgtccatggtgtttgggttttgagagaacgaagagatttggggatttt |
44858404 |
T |
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