View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7032_high_2 (Length: 579)
Name: NF7032_high_2
Description: NF7032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7032_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Original strand, 19342232 - 19342779
Alignment:
| Q |
1 |
gaatcagagaaaggatgagaacaaatgagcaattaatatgatgttgtgtgttagaggtggaacaaataacaaaaaataaacatggctttcccacatgtca |
100 |
Q |
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| T |
19342232 |
gaatcagagaaaggatgagaacaaatgaacaattaatatgatgttgtgtgttagaggtggaacaaataaca-----------tggctttcccacatgtca |
19342320 |
T |
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| Q |
101 |
acactgcaatgaggtaaaacatacatagttgtccacgtgtcaagaacttacaatccttagctcacgtggcatattgtagtgaagacagaaaattttggtt |
200 |
Q |
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| T |
19342321 |
-cattgcaacgaggtaaaacatacatagttgtccacgtgtcaagaatttacaatccttagctcacgtggcatattgtagtgaagacagaaaattttggtt |
19342419 |
T |
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| Q |
201 |
tcttagtgagaactacatgcacgtggcatttcaagactattgttgt-tcagctccaacctatgatcatgtgaaattgttcatagaatcagaatggttatt |
299 |
Q |
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| T |
19342420 |
tcttcgtgagaactacatgcacgtggcatttcaagactattgttgtctcagctacaacctatgatcatgtgaaattgttcatagaatcagaatggttatt |
19342519 |
T |
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| Q |
300 |
taatgcataccatgttaaagttcaaaaactctttaagttacgtgcttttcttttgctcattgtaaacaaagaagcacaaaatgaaggtatgttcatattc |
399 |
Q |
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| T |
19342520 |
taatgcataccatgttaaagttcaaaaactctt-aagttacgtgcttttcttttgctcattgtaaacaaagaagcacaaaatgaaggtatgttcatattc |
19342618 |
T |
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| Q |
400 |
tttcattgttttcttctttcttttccatatggttctatatttgattttatggaaattttgaaggttgaatcgaggtcacataatgttcatcatgcacatg |
499 |
Q |
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| T |
19342619 |
tttcattgttttcttctttcttttccatatggttctatatttgattttatggaaattttgaaggttgaatcgaggtcacataatgttcatcatgcacatg |
19342718 |
T |
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| Q |
500 |
gggaagaagagaaggtgatgacaagaaagcagaaggcagaatctaaggcacatgaagtaga |
560 |
Q |
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| T |
19342719 |
gggaagaagagaaggtgatgacaaggaagcagaaggcagaatctaaggcacatgaagtaga |
19342779 |
T |
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