View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7032_high_3 (Length: 457)
Name: NF7032_high_3
Description: NF7032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7032_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 68 - 297
Target Start/End: Original strand, 3310836 - 3311071
Alignment:
| Q |
68 |
gatagactagaaaatgaacgagaaatggaaaattcgaaaatgactcatgaggaatccaactcctagtaacacacacagttatag------cagccactaa |
161 |
Q |
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| T |
3310836 |
gatagactagaaaatgaatgagaaatggaaaattcgaaaatgactcatgaggaatccaactcctagtaacacacacagttatagtaatagcagccactaa |
3310935 |
T |
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| Q |
162 |
aacgacgtcgtattgattaatttattcataaccgcgcgctcactataacatgcacacatctcttaacatgcgcaccctcttacgtaccccaaaccctatt |
261 |
Q |
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| T |
3310936 |
aacgacgtcgtattgattgatttattcataaccgcgcgctcactataacatgcgcacatctcttaacatgcgcaccctcttacgtatcccaaaccctatt |
3311035 |
T |
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| Q |
262 |
taaacctaacttgacacaatccacgattcaactttg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
3311036 |
taaacctaacttgacacaatccacgattcaactttg |
3311071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 339 - 441
Target Start/End: Original strand, 3311113 - 3311215
Alignment:
| Q |
339 |
aaacaaaaagtcgcaaattcacatcacgaaccttctcagaaacctccattgattcttcacgaaattgccataatccatcttctttctcgctttggtctct |
438 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3311113 |
aaacaaaaagtcgcaaattcacatcacgaaccttctcagaaacctccattgattcttcacgaaattgccataatccattttctttctcgctttggtctct |
3311212 |
T |
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| Q |
439 |
tcg |
441 |
Q |
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||| |
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| T |
3311213 |
tcg |
3311215 |
T |
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