View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7032_high_5 (Length: 349)
Name: NF7032_high_5
Description: NF7032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7032_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 17596193 - 17596523
Alignment:
| Q |
1 |
atgaaatgacgtgaaaattactcatctaagcattaccttctctcccctaataaaaatctacatgcaaacatatgcaaagaacaaaagataaattagttag |
100 |
Q |
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| T |
17596193 |
atgaaatgacgtgaaaattactcatctaagcattaccttctctcccctaataaaaatctacatgcaaacatatgcaaagaacaaaagataaattagttag |
17596292 |
T |
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| Q |
101 |
tcttgcaattctagactaaaatgttcattcactcataaatttgtatgtacttggttcataactaaatgtaaattttgtttatattggtcaggttttgggt |
200 |
Q |
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| T |
17596293 |
tcttgcaattctagactaaaatgttcattcactcataaatttgtatgtacttggttcataactaaatgtaaattttgtttatattggtcaggttttgggt |
17596392 |
T |
|
| Q |
201 |
ccgcaggcatttacaattatggtgtatagtatattttttatgacatttgtagtagcacctatcatcaatgcaatgtacaaaccaagagctacatttgagc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
17596393 |
ccgcaggcatttacaattatggtgtatagtatattttttatgacatttgtagtagcacctatcatcaatgcaatgtataaaccaagagctacatttgagc |
17596492 |
T |
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| Q |
301 |
aaaacaagctaaggacaatagagaatttgag |
331 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
17596493 |
aaaacaagctaaggacaatagagaatttgag |
17596523 |
T |
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