View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7032_high_9 (Length: 242)
Name: NF7032_high_9
Description: NF7032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7032_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 7474322 - 7474513
Alignment:
| Q |
19 |
gaattctctttgttgtttagtttgtgaatttcacggaacttatgtcgaagaacattcctccttcacgaaaagaggcagcatttgctctcgcagcattgat |
118 |
Q |
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| T |
7474322 |
gaattctctttgtgctttagtttgtgaatttcacggaacttatgtcgaagaacattcctccttcacgaaaagaggcagcatttgctctcgcagcattgat |
7474421 |
T |
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| Q |
119 |
ggaaattccttctcagtataaggccgcaatagagcttaatctacttgggtaaaattttgatttgttgccttcagtattattatctcttttctt |
211 |
Q |
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| T |
7474422 |
ggaaattccttctcagtataaggccgcaatagagcttaatctacttgggtaaaattttgatttgttgccttcagtattactat-tcttttctt |
7474513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 34 - 161
Target Start/End: Complemental strand, 11688935 - 11688808
Alignment:
| Q |
34 |
tttagtttgtgaatttcacggaacttatgtcgaagaacattcctccttcacgaaaagaggcagcatttgctctcgcagcattgatggaaattccttctca |
133 |
Q |
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| T |
11688935 |
tttagtttgtgaatttcacggagattatgtcaaagaatacacctccttcacgaaaagaagcagcatttgcacttgcagcattgatggaaattccttctca |
11688836 |
T |
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| Q |
134 |
gtataaggccgcaatagagcttaatcta |
161 |
Q |
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| T |
11688835 |
gtataaggcagcaatagagcttaatcta |
11688808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 30959132 - 30959238
Alignment:
| Q |
34 |
tttagtttgtgaatttcacggaacttatgtcgaagaacattcctccttcacgaaaagaggcagcatttgctctcgcagcattgatggaaattccttctca |
133 |
Q |
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| T |
30959132 |
tttagtttgtgaatttcgcggaaatcatgtcaaacaacatttctcttacacgaaaagaggcagcatttgctctcgaagcattcatgaaaatcccttctca |
30959231 |
T |
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| Q |
134 |
gtataag |
140 |
Q |
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||||||| |
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| T |
30959232 |
gtataag |
30959238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 30955713 - 30955774
Alignment:
| Q |
119 |
ggaaattccttctcagtataaggccgcaatagagcttaatctacttgggtaaaattttgatt |
180 |
Q |
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| T |
30955713 |
ggaaattctttttcagtataaggccgcaaaagagcttggtctactagggtaaaattttgatt |
30955774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 34392167 - 34392131
Alignment:
| Q |
37 |
agtttgtgaatttcacggaacttatgtcgaagaacat |
73 |
Q |
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| T |
34392167 |
agtttgtgaatttcacggaaataatgtcgaagaacat |
34392131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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