View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7032_low_10 (Length: 238)

Name: NF7032_low_10
Description: NF7032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7032_low_10
NF7032_low_10
[»] chr3 (5 HSPs)
chr3 (129-168)||(30315442-30315481)
chr3 (130-168)||(19373718-19373756)
chr3 (130-168)||(36844722-36844760)
chr3 (136-168)||(38141082-38141114)
chr3 (136-168)||(40717656-40717688)
[»] chr6 (9 HSPs)
chr6 (130-168)||(9940780-9940818)
chr6 (136-168)||(32193942-32193974)
chr6 (130-168)||(3988726-3988764)
chr6 (130-168)||(13011330-13011368)
chr6 (130-168)||(17552229-17552267)
chr6 (130-168)||(20226203-20226241)
chr6 (130-168)||(22120187-22120225)
chr6 (136-165)||(12322872-12322901)
chr6 (135-168)||(21271390-21271423)
[»] chr4 (3 HSPs)
chr4 (130-168)||(10573141-10573179)
chr4 (138-168)||(47458381-47458411)
chr4 (136-169)||(52162235-52162268)
[»] chr2 (10 HSPs)
chr2 (130-168)||(10195807-10195845)
chr2 (130-168)||(37038752-37038790)
chr2 (130-168)||(11188232-11188270)
chr2 (138-168)||(27726410-27726440)
chr2 (130-168)||(33056023-33056061)
chr2 (130-168)||(34455824-34455862)
chr2 (135-168)||(18719420-18719453)
chr2 (136-168)||(8540171-8540203)
chr2 (140-168)||(9391586-9391614)
chr2 (140-168)||(36685734-36685762)
[»] chr1 (8 HSPs)
chr1 (130-168)||(7191187-7191225)
chr1 (130-168)||(8894996-8895034)
chr1 (130-168)||(26595050-26595088)
chr1 (138-168)||(5111-5141)
chr1 (130-168)||(25560853-25560891)
chr1 (130-168)||(27209121-27209159)
chr1 (130-168)||(28538337-28538375)
chr1 (130-168)||(31699270-31699308)
[»] chr7 (4 HSPs)
chr7 (135-168)||(28289347-28289380)
chr7 (130-165)||(21819418-21819453)
chr7 (130-168)||(40339591-40339629)
chr7 (140-168)||(34012589-34012617)
[»] chr8 (4 HSPs)
chr8 (130-168)||(515009-515047)
chr8 (138-168)||(9812305-9812335)
chr8 (138-168)||(13496370-13496400)
chr8 (130-168)||(15750312-15750350)
[»] chr5 (8 HSPs)
chr5 (130-168)||(843150-843188)
chr5 (130-168)||(11977720-11977758)
chr5 (130-168)||(13974406-13974444)
chr5 (130-168)||(34534491-34534529)
chr5 (136-165)||(28591611-28591640)
chr5 (135-168)||(38370004-38370037)
chr5 (136-168)||(7721227-7721259)
chr5 (140-168)||(36165019-36165047)
[»] scaffold0983 (1 HSPs)
scaffold0983 (136-168)||(675-707)


Alignment Details
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 30315481 - 30315442
Alignment:
Q  129 gagaatgagagatgttattttaccaaattatcctaatcaa 168  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  30315481 gagaaagagagatgttattttaccaaattatcctaatcaa 30315442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 19373756 - 19373718
Alignment:
Q  130 agaatgagagatgttattttaccaaattatcctaatcaa 168  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  19373756 agaaagagagatgttattttaccaaattctcctaatcaa 19373718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 36844722 - 36844760
Alignment:
Q  130 agaatgagagatgttattttaccaaattatcctaatcaa 168  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  36844722 agaaagagagatattattttaccaaattatcctaatcaa 36844760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 38141114 - 38141082
Alignment:
Q  136 agagatgttattttaccaaattatcctaatcaa 168  Q
    |||||||||||||||||||||||| ||||||||    
T  38141114 agagatgttattttaccaaattattctaatcaa 38141082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 168
Target Start/End: Original strand, 40717656 - 40717688
Alignment:
Q  136 agagatgttattttaccaaattatcctaatcaa 168  Q
    ||||||||||||||||||||||||| |||||||    
T  40717656 agagatgttattttaccaaattatcttaatcaa 40717688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 9940818 - 9940780
Alignment:
Q  130 agaatgagagatgttattttaccaaattatcctaatcaa 168  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  9940818 agaaagagagatgttattttaccaaattatcctaatcaa 9940780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 32193974 - 32193942
Alignment:
Q  136 agagatgttattttaccaaattatcctaatcaa 168  Q
    |||||||||||||||||||||||||||||||||    
T  32193974 agagatgttattttaccaaattatcctaatcaa 32193942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 3988726 - 3988764
Alignment:
Q  130 agaatgagagatgttattttaccaaattatcctaatcaa 168  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  3988726 agaaagagagatgttattttaccaaattatcataatcaa 3988764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 13011330 - 13011368
Alignment:
Q  130 agaatgagagatgttattttaccaaattatcctaatcaa 168  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  13011330 agaaagagagatgttattttaccaaattatcttaatcaa 13011368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 17552229 - 17552267
Alignment:
Q  130 agaatgagagatgttattttaccaaattatcctaatcaa 168  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  17552229 agaaagagagatgtaattttaccaaattatcctaatcaa 17552267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 20226203 - 20226241
Alignment:
Q  130 agaatgagagatgttattttaccaaattatcctaatcaa 168  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  20226203 agaaagagagatgttattttaccaaattatactaatcaa 20226241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 22120187 - 22120225
Alignment:
Q  130 agaatgagagatgttattttaccaaattatcctaatcaa 168  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  22120187 agaaagagagatgttattttaccaaattatactaatcaa 22120225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 165
Target Start/End: Original strand, 12322872 - 12322901
Alignment:
Q  136 agagatgttattttaccaaattatcctaat 165  Q
    ||||||||||||||||||||||||||||||    
T  12322872 agagatgttattttaccaaattatcctaat 12322901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 168
Target Start/End: Original strand, 21271390 - 21271423
Alignment:
Q  135 gagagatgttattttaccaaattatcctaatcaa 168  Q
    ||||||||||||||||||||| ||||||||||||    
T  21271390 gagagatgttattttaccaaagtatcctaatcaa 21271423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 10573141 - 10573179
Alignment:
Q  130 agaatgagagatgttattttaccaaattatcctaatcaa 168  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  10573141 agaaagagagatgttattttaccaaattatcctaatcaa 10573179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 168
Target Start/End: Original strand, 47458381 - 47458411
Alignment:
Q  138 agatgttattttaccaaattatcctaatcaa 168  Q
    |||||||||||||||||||||||||||||||    
T  47458381 agatgttattttaccaaattatcctaatcaa 47458411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 52162268 - 52162235
Alignment:
Q  136 agagatgttattttaccaaattatcctaatcaaa 169  Q
    ||||||||||||||||||||||||| ||||||||    
T  52162268 agagatgttattttaccaaattatcttaatcaaa 52162235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 10195845 - 10195807
Alignment:
Q  130 agaatgagagatgttattttaccaaattatcctaatcaa 168  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  10195845 agaaagagagatgttattttaccaaattatcctaatcaa 10195807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 37038752 - 37038790
Alignment:
Q  130 agaatgagagatgttattttaccaaattatcctaatcaa 168  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  37038752 agaaagagagatgttattttaccaaattatcctaatcaa 37038790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 11188232 - 11188270
Alignment:
Q  130 agaatgagagatgttattttaccaaattatcctaatcaa 168  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  11188232 agaaagagagatgttattttaccaagttatcctaatcaa 11188270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 168
Target Start/End: Original strand, 27726410 - 27726440
Alignment:
Q  138 agatgttattttaccaaattatcctaatcaa 168  Q
    |||||||||||||||||||||||||||||||    
T  27726410 agatgttattttaccaaattatcctaatcaa 27726440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 33056061 - 33056023
Alignment:
Q  130 agaatgagagatgttattttaccaaattatcctaatcaa 168  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  33056061 agaaagagagatgttattttaccaaattatcataatcaa 33056023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 34455862 - 34455824
Alignment:
Q  130 agaatgagagatgttattttaccaaattatcctaatcaa 168  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  34455862 agaaagagagatgttcttttaccaaattatcctaatcaa 34455824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 168
Target Start/End: Original strand, 18719420 - 18719453
Alignment:
Q  135 gagagatgttattttaccaaattatcctaatcaa 168  Q
    ||||| ||||||||||||||||||||||||||||    
T  18719420 gagaggtgttattttaccaaattatcctaatcaa 18719453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 8540203 - 8540171
Alignment:
Q  136 agagatgttattttaccaaattatcctaatcaa 168  Q
    ||||||||||||||| |||||||||||||||||    
T  8540203 agagatgttattttatcaaattatcctaatcaa 8540171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 168
Target Start/End: Original strand, 9391586 - 9391614
Alignment:
Q  140 atgttattttaccaaattatcctaatcaa 168  Q
    |||||||||||||||||||||||||||||    
T  9391586 atgttattttaccaaattatcctaatcaa 9391614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 168
Target Start/End: Original strand, 36685734 - 36685762
Alignment:
Q  140 atgttattttaccaaattatcctaatcaa 168  Q
    |||||||||||||||||||||||||||||    
T  36685734 atgttattttaccaaattatcctaatcaa 36685762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 7191187 - 7191225
Alignment:
Q  130 agaatgagagatgttattttaccaaattatcctaatcaa 168  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  7191187 agaaagagagatgttattttaccaaattatcctaatcaa 7191225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 8894996 - 8895034
Alignment:
Q  130 agaatgagagatgttattttaccaaattatcctaatcaa 168  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  8894996 agaaagagagatgttattttaccaaattatcctaatcaa 8895034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 26595050 - 26595088
Alignment:
Q  130 agaatgagagatgttattttaccaaattatcctaatcaa 168  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  26595050 agaaagagagatgttattttaccaaattatcctaatcaa 26595088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 168
Target Start/End: Complemental strand, 5141 - 5111
Alignment:
Q  138 agatgttattttaccaaattatcctaatcaa 168  Q
    |||||||||||||||||||||||||||||||    
T  5141 agatgttattttaccaaattatcctaatcaa 5111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 25560853 - 25560891
Alignment:
Q  130 agaatgagagatgttattttaccaaattatcctaatcaa 168  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  25560853 agaaagagagatgttattttaccaaattatcataatcaa 25560891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 27209159 - 27209121
Alignment:
Q  130 agaatgagagatgttattttaccaaattatcctaatcaa 168  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  27209159 agaaagagatatgttattttaccaaattatcctaatcaa 27209121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 28538375 - 28538337
Alignment:
Q  130 agaatgagagatgttattttaccaaattatcctaatcaa 168  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  28538375 agaaagagagatgttattttaccaaattatcataatcaa 28538337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 31699270 - 31699308
Alignment:
Q  130 agaatgagagatgttattttaccaaattatcctaatcaa 168  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  31699270 agaaagagagatgttattttaccaaattatcataatcaa 31699308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 168
Target Start/End: Complemental strand, 28289380 - 28289347
Alignment:
Q  135 gagagatgttattttaccaaattatcctaatcaa 168  Q
    ||||||||||||||||||||||||||||||||||    
T  28289380 gagagatgttattttaccaaattatcctaatcaa 28289347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 165
Target Start/End: Complemental strand, 21819453 - 21819418
Alignment:
Q  130 agaatgagagatgttattttaccaaattatcctaat 165  Q
    |||| |||||||||||||||||||||||||||||||    
T  21819453 agaaagagagatgttattttaccaaattatcctaat 21819418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 40339629 - 40339591
Alignment:
Q  130 agaatgagagatgttattttaccaaattatcctaatcaa 168  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  40339629 agaaagagaaatgttattttaccaaattatcctaatcaa 40339591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 168
Target Start/End: Complemental strand, 34012617 - 34012589
Alignment:
Q  140 atgttattttaccaaattatcctaatcaa 168  Q
    |||||||||||||||||||||||||||||    
T  34012617 atgttattttaccaaattatcctaatcaa 34012589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 515047 - 515009
Alignment:
Q  130 agaatgagagatgttattttaccaaattatcctaatcaa 168  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  515047 agaaagagagatgttattttagcaaattatcctaatcaa 515009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 168
Target Start/End: Complemental strand, 9812335 - 9812305
Alignment:
Q  138 agatgttattttaccaaattatcctaatcaa 168  Q
    |||||||||||||||||||||||||||||||    
T  9812335 agatgttattttaccaaattatcctaatcaa 9812305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 168
Target Start/End: Complemental strand, 13496400 - 13496370
Alignment:
Q  138 agatgttattttaccaaattatcctaatcaa 168  Q
    |||||||||||||||||||||||||||||||    
T  13496400 agatgttattttaccaaattatcctaatcaa 13496370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 15750312 - 15750350
Alignment:
Q  130 agaatgagagatgttattttaccaaattatcctaatcaa 168  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  15750312 agaaagagagatattattttaccaaattatcctaatcaa 15750350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 843188 - 843150
Alignment:
Q  130 agaatgagagatgttattttaccaaattatcctaatcaa 168  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  843188 agaaggagatatgttattttaccaaattatcctaatcaa 843150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 11977758 - 11977720
Alignment:
Q  130 agaatgagagatgttattttaccaaattatcctaatcaa 168  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  11977758 agaaagagagatgttgttttaccaaattatcctaatcaa 11977720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 13974444 - 13974406
Alignment:
Q  130 agaatgagagatgttattttaccaaattatcctaatcaa 168  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  13974444 agaaagagaggtgttattttaccaaattatcctaatcaa 13974406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 34534529 - 34534491
Alignment:
Q  130 agaatgagagatgttattttaccaaattatcctaatcaa 168  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  34534529 agaaagagagatattattttaccaaattatcctaatcaa 34534491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 165
Target Start/End: Original strand, 28591611 - 28591640
Alignment:
Q  136 agagatgttattttaccaaattatcctaat 165  Q
    ||||||||||||||||||||||||||||||    
T  28591611 agagatgttattttaccaaattatcctaat 28591640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 168
Target Start/End: Complemental strand, 38370037 - 38370004
Alignment:
Q  135 gagagatgttattttaccaaattatcctaatcaa 168  Q
    |||| |||||||||||||||||||||||||||||    
T  38370037 gagatatgttattttaccaaattatcctaatcaa 38370004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 7721259 - 7721227
Alignment:
Q  136 agagatgttattttaccaaattatcctaatcaa 168  Q
    ||||||||||||||| |||||||||||||||||    
T  7721259 agagatgttattttaacaaattatcctaatcaa 7721227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 168
Target Start/End: Complemental strand, 36165047 - 36165019
Alignment:
Q  140 atgttattttaccaaattatcctaatcaa 168  Q
    |||||||||||||||||||||||||||||    
T  36165047 atgttattttaccaaattatcctaatcaa 36165019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0983 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0983
Description:

Target: scaffold0983; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 168
Target Start/End: Original strand, 675 - 707
Alignment:
Q  136 agagatgttattttaccaaattatcctaatcaa 168  Q
    ||||||||||||||||||||||||| |||||||    
T  675 agagatgttattttaccaaattatcttaatcaa 707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University