View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7032_low_6 (Length: 326)
Name: NF7032_low_6
Description: NF7032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7032_low_6 |
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| [»] scaffold0036 (1 HSPs) |
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| [»] scaffold0361 (1 HSPs) |
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| [»] scaffold0224 (1 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 106 - 318
Target Start/End: Original strand, 31231129 - 31231341
Alignment:
| Q |
106 |
aagcatttcggtgacgattcaatttccaccgttgaggtaattattagatgtgcttatcatatggtattatatcattctgtgtgaatttgagagtaactaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31231129 |
aagcatttcggtgacgattcaatttccaccgttgaggtaattattagatgtgcttatcatatggtattatatcattctgtgtgaatttgagagtaactaa |
31231228 |
T |
|
| Q |
206 |
ttgttagggtttggnnnnnnnngtcaatttagggattattctgctaactgtggaattggatccggtggagttcgacgtggttgggatgcgaaagagatag |
305 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31231229 |
ttgttggggtttggttttttttgtcaatttagggattattctgctaactgtggaattggatccggtggagttcgacgtggttgggatgcgaaagagatag |
31231328 |
T |
|
| Q |
306 |
aggattctctgct |
318 |
Q |
| |
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||||||||||||| |
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| T |
31231329 |
aggattctctgct |
31231341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 40172851 - 40172651
Alignment:
| Q |
19 |
cgtttcccggtggtcgatcaatggctctgagcgcgacagtcacagtgaggcaaccaaataccacacacaattcttttacgacttgggaagcatttcggtg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
40172851 |
cgtttcccggtggtcgatcaatggctctgagcgcgacagtcacagtgaggcaaccaaatacgacacacaattcttttacgacttgggaagcattccggtg |
40172752 |
T |
|
| Q |
119 |
acgattcaatttccaccgttgaggtaattattagatgtgcttatcatatggtattatatcattctgtgtgaatttgagagtaactaattgttagggtttg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| |
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| T |
40172751 |
acgattcaatttccaccgttgaggtaattattagatgtgcatatcatatggtattatatcattctgtgtgaatttgagagaaactaattgttggagtttg |
40172652 |
T |
|
| Q |
219 |
g |
219 |
Q |
| |
|
| |
|
|
| T |
40172651 |
g |
40172651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 23820755 - 23820955
Alignment:
| Q |
19 |
cgtttcccggtggtcgatcaatggctctgagcgcgacagtcacagtgaggcaaccaaataccacacacaattcttttacgacttgggaagcatttcggtg |
118 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
23820755 |
cgtttcccggcggtcgatcaatggctctgagcgcgacagtcacagtgaggcaaccaaatacgacacacaattcttttacgacttgggaagcattccggtg |
23820854 |
T |
|
| Q |
119 |
acgattcaatttccaccgttgaggtaattattagatgtgcttatcatatggtattatatcattctgtgtgaatttgagagtaactaattgttagggtttg |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| |
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| T |
23820855 |
acgattcaatttccaccgttgaggtaattattagatgtgcatatcatatggtattatatcattctgtgtgaatttgagagaaactaattgttggagtttg |
23820954 |
T |
|
| Q |
219 |
g |
219 |
Q |
| |
|
| |
|
|
| T |
23820955 |
g |
23820955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 228 - 318
Target Start/End: Complemental strand, 36237242 - 36237152
Alignment:
| Q |
228 |
gtcaatttagggattattctgctaactgtggaattggatccggtggagttcgacgtggttgggatgcgaaagagatagaggattctctgct |
318 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36237242 |
gtcaatttatggattattctgctaactgtggaattggatccggtggagttcgacgtggttgggatgcgaaagagatagaggattttctgct |
36237152 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 16359470 - 16359533
Alignment:
| Q |
255 |
gtggaattggatccggtggagttcgacgtggttgggatgcgaaagagatagaggattctctgct |
318 |
Q |
| |
|
||||||||||| |||||||| | |||||||||||||||||||||||| |||||||||| |||| |
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| T |
16359470 |
gtggaattggagacggtggagcttgacgtggttgggatgcgaaagagacagaggattctatgct |
16359533 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 8541420 - 8541620
Alignment:
| Q |
19 |
cgtttcccggtggtcgatcaatggctctgagcgcgacagtcacagtgaggcaaccaaataccacacacaattcttttacgacttgggaagcatttcggtg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
8541420 |
cgtttcccggtggtcgatcaatggctctgagcgcgacagtcacagtgaggcaaccaaatacgacacacaattcttttacgacttgggaagcattccggtg |
8541519 |
T |
|
| Q |
119 |
acgattcaatttccaccgttgaggtaattattagatgtgcttatcatatggtattatatcattctgtgtgaatttgagagtaactaattgttagggtttg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| |
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| T |
8541520 |
acgattcaatttccaccgttgaggtaattattagatgtgcatatcatatggtattatatcattctgtgtgaatttgagagaaactaattgttggagtttg |
8541619 |
T |
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| Q |
219 |
g |
219 |
Q |
| |
|
| |
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| T |
8541620 |
g |
8541620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 46231128 - 46231073
Alignment:
| Q |
137 |
ttgaggtaattattagatgtgcttatcatatggtattatatcattctgtgtgaatt |
192 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| | |||||||| |||||||| |
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| T |
46231128 |
ttgaggtaattcttagatgtgcttatcatatggtatcagatcattctttgtgaatt |
46231073 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 256 - 318
Target Start/End: Original strand, 98443 - 98505
Alignment:
| Q |
256 |
tggaattggatccggtggagttcgacgtggttgggatgcgaaagagatagaggattctctgct |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
98443 |
tggaattggatccggtggagttcgacgtggttgggatgcgaaagagatagaggattctctgct |
98505 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 117 - 205
Target Start/End: Complemental strand, 35241587 - 35241499
Alignment:
| Q |
117 |
tgacgattcaatttccaccgttgaggtaattattagatgtgcttatcatatggtattatatcattctgtgtgaatttgagagtaactaa |
205 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||| ||||||||||||||| |||||||| ||||||||||||||| ||||||||| |||||| |
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| T |
35241587 |
tgacgattcagtttccaccattgaggtcatttttagatgtgcttatcgtatggtatcatatcattctgtgtgcatttgagagcaactaa |
35241499 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 128 - 197
Target Start/End: Complemental strand, 42836584 - 42836515
Alignment:
| Q |
128 |
tttccaccgttgaggtaattattagatgtgcttatcatatggtattatatcattctgtgtgaatttgaga |
197 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| |||||||| |||||||||| | ||||||||||| |
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|
| T |
42836584 |
tttccaccattgaggtaattcttagatgtgcttattgtatggtatcatatcattctctatgaatttgaga |
42836515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 302
Target Start/End: Original strand, 19769434 - 19769481
Alignment:
| Q |
255 |
gtggaattggatccggtggagttcgacgtggttgggatgcgaaagaga |
302 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
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| T |
19769434 |
gtggaattggagtcggtggagttcgacgaggttgggatgcgaaagaga |
19769481 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 9096 - 9033
Alignment:
| Q |
255 |
gtggaattggatccggtggagttcgacgtggttgggatgcgaaagagatagaggattctctgct |
318 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||| |||||||| |||||| |
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|
| T |
9096 |
gtggaattggagacagtggagttcgacgtggttgggatgcgaaagagacagaggattgtctgct |
9033 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 128 - 197
Target Start/End: Complemental strand, 23665 - 23596
Alignment:
| Q |
128 |
tttccaccgttgaggtaattattagatgtgcttatcatatggtattatatcattctgtgtgaatttgaga |
197 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| |||||||| |||||||||| | ||||||||||| |
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|
| T |
23665 |
tttccaccattgaggtaattcttagatgtgcttattgtatggtatcatatcattctctatgaatttgaga |
23596 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 14702076 - 14702131
Alignment:
| Q |
137 |
ttgaggtaattattagatgtgcttatcatatggtattatatcattctgtgtgaatt |
192 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| | |||||||| |||||||| |
|
|
| T |
14702076 |
ttgaggtaattcttagatgtgcttatcatatggtatcagatcattctttgtgaatt |
14702131 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 246805 - 246856
Alignment:
| Q |
267 |
ccggtggagttcgacgtggttgggatgcgaaagagatagaggattctctgct |
318 |
Q |
| |
|
||||||||| |||||| || |||||||||||||||| ||||||||||||||| |
|
|
| T |
246805 |
ccggtggagctcgacgcggctgggatgcgaaagagacagaggattctctgct |
246856 |
T |
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