View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7033_high_11 (Length: 315)

Name: NF7033_high_11
Description: NF7033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7033_high_11
NF7033_high_11
[»] chr1 (1 HSPs)
chr1 (1-297)||(26348098-26348394)


Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 26348394 - 26348098
Alignment:
Q  1 tggtgtaacgaattttgaacaacttaggaaattgcattatttacgagcagcagcacatgaaagtatgagactatatccaccaattcaatttgattcaaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26348394 tggtgtaacgaattttgaacaacttaggaaattgcattatttacaagcagcagcacatgaaagtatgagactatatccaccaattcaatttgattcaaag 26348295  T
Q  101 ttttgtttggatgatgatgttttaccagatggtacaaaagtgaaaagtggtactagggttacttatcatccttatgcaatgggtaggttggaggaattgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26348294 ttttgtttggatgatgatgttttaccagatggtacaaaagtgaaaagtggaactagggttacttatcatccttatgcaatgggtaggttggaggaattgt 26348195  T
Q  201 ggggtccagattgtttagagtttaagcctgaaaggtggttgaaagatggtgtgtttcaaccttcaaatcaattcaagtaccctatttttcaagctgg 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26348194 ggggtccagattgtttagagtttaagcctgaaaggtggttgaaagatggtgtgtttcaaccttcaaatcaattcaagtaccctatttttcaagctgg 26348098  T

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