View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7033_high_13 (Length: 284)
Name: NF7033_high_13
Description: NF7033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7033_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 22217875 - 22217710
Alignment:
| Q |
1 |
aacaagggactattctcttgtatatatcttctactaacatgatttaatgtttgtttatatgctttgatgcagtctattgacataacatgatacacatacg |
100 |
Q |
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| T |
22217875 |
aacaagggactattctcttgtatatatcttctactcacatgatttaatgtttgtttatatgctttgatgcagtctattgacataacatggtacacatacg |
22217776 |
T |
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| Q |
101 |
aggagtatgagaaatctttggcaaatcctgtagg--tatcatgcctatattgttttagaaatggcc |
164 |
Q |
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| T |
22217775 |
aggagtatgagaaatctttggcaaatcctgtaggtatatcatgcctagattgttttagaaatggcc |
22217710 |
T |
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Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 194 - 268
Target Start/End: Complemental strand, 22217564 - 22217490
Alignment:
| Q |
194 |
tatacatgttctccctattgtttccttgatttattataactgtcgtatgttgttctctctatatttggtattttg |
268 |
Q |
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| T |
22217564 |
tatacatgttctccctattgtttccttgatttattataactatcgtatgttgttctctctatatttggtattttg |
22217490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 37 - 150
Target Start/End: Complemental strand, 38756522 - 38756409
Alignment:
| Q |
37 |
acatgatttaatgtttgtttatatgctttgatgcagtctattgacataacatgatacacatacgaggagtatgagaaatctttggcaaatcctgtaggta |
136 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
38756522 |
acatgatttaatgtttgtttacttgctttgatgcagtctgttgacataacaagatacacggacgaggagtatgagaaatatttggcaaatcctgtaggta |
38756423 |
T |
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| Q |
137 |
tcatgcctatattg |
150 |
Q |
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| T |
38756422 |
tcatgtctagattg |
38756409 |
T |
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