View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7033_high_19 (Length: 249)
Name: NF7033_high_19
Description: NF7033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7033_high_19 |
 | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
| [»] scaffold0011 (1 HSPs) |
| | |
|
| [»] scaffold0577 (1 HSPs) |
| | |
|
| [»] scaffold0570 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 9611630 - 9611869
Alignment:
| Q |
1 |
taagggaagagagaccttcagtacaaatgataaataaataaggtgagaaaggatccccttgacggagaccgcgtcctggcacaataggacccactgaagc |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9611630 |
taagggaagagagaccttcagcacaaatgataaataaataaggtgagagaggatccccttgacggagtccgcgtcctggcacaataggacccactgaagc |
9611729 |
T |
|
| Q |
101 |
tctattaaccaaaaccgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaatcatgatttctcgtagg |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9611730 |
tccattaaccaaaaccgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaatcatgatttctcgtagg |
9611829 |
T |
|
| Q |
201 |
taatcccaatctaatctgtcatatgctttactgatgtcca |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9611830 |
taatcccaatctaatctgtcatatgctttactaatgtcca |
9611869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 27454612 - 27454840
Alignment:
| Q |
1 |
taagggaagagagaccttcagtacaaatgataaataaataaggtgagaaaggatccccttgacggagaccgcgtcctggcacaataggacccactgaagc |
100 |
Q |
| |
|
||||||| || ||||||||| || |||||| || ||||||||||| | ||||| || ||||| || || | ||||| |||||||||||||| || || |
|
|
| T |
27454612 |
taagggaggaaagaccttcaacacgaatgatgaacaaataaggtgaaaggggatcaccctgacgaaggccacaccctggtacaataggacccaccgatgc |
27454711 |
T |
|
| Q |
101 |
tctattaaccaaaaccgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaatcatgatttctcgtagg |
200 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
27454712 |
tccattaaccaagaccgagtaatcaaccgtctcaacacaaagcataatccagttaacccatcgagatgagaaacccatttgaatcatgatatctcgtaga |
27454811 |
T |
|
| Q |
201 |
taatcccaatctaatctgtcatatgcttt |
229 |
Q |
| |
|
||||||||||||| ||| ||||| ||||| |
|
|
| T |
27454812 |
taatcccaatctagtctatcataagcttt |
27454840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 26431321 - 26431560
Alignment:
| Q |
1 |
taagggaagagagaccttcagtacaaatgataaataaataaggtgagaaaggatccccttgacggagaccgcgtcctggcacaataggacccactgaagc |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26431321 |
taagggaagagagaccttcagcacaaatgataaataaataaggtgagagaggatccccttgacggagtccgcgtcctggcacaataggacccactgaagc |
26431420 |
T |
|
| Q |
101 |
tctattaaccaaaaccgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaatcatgatttctcgtagg |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
26431421 |
tccattaaccaaaaccgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaactcatttgaatcatgatttcttgtagg |
26431520 |
T |
|
| Q |
201 |
taatcccaatctaatctgtcatatgctttactgatgtcca |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26431521 |
taatcccaatctaatctgtcatatgctttactaatgtcca |
26431560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 48444678 - 48444439
Alignment:
| Q |
1 |
taagggaagagagaccttcagtacaaatgataaataaataaggtgagaaaggatccccttgacggagaccgcgtcctggcacaataggacccactgaagc |
100 |
Q |
| |
|
||||||| || ||||||||| ||||||||| |||||||||||||| | ||||| || ||||| || ||||| ||||| ||||||||| ||||| || |
|
|
| T |
48444678 |
taagggaggaaagaccttcaacacaaatgatgaataaataaggtgaaaggggatcaccctgacgaaggccgcgccctggtacaataggatccactagtgc |
48444579 |
T |
|
| Q |
101 |
tctattaaccaaaaccgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaatcatgatttctcgtagg |
200 |
Q |
| |
|
|| ||||||||| || || || ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||| ||||||||| |||||||| |
|
|
| T |
48444578 |
tccattaaccaagactgaatagtcaaccgtctcaacacaaagcataatccagctaacccaacgagatgagaaacccatttaaatcatgatatctcgtaga |
48444479 |
T |
|
| Q |
201 |
taatcccaatctaatctgtcatatgctttactgatgtcca |
240 |
Q |
| |
|
|| |||||||||| ||| ||||| |||||||| ||||||| |
|
|
| T |
48444478 |
tagtcccaatctagtctatcataagctttactaatgtcca |
48444439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 77 - 232
Target Start/End: Complemental strand, 2542598 - 2542443
Alignment:
| Q |
77 |
tggcacaataggacccactgaagctctattaaccaaaaccgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaaccc |
176 |
Q |
| |
|
|||||||||||||||||| | |||| ||| ||||| |||||||| |||||||| ||||| ||||| ||||||||||||||||| || || |||||| |
|
|
| T |
2542598 |
tggcacaataggacccaccgttgctccattgaccaagaccgagtagtcaaccgtttcaacgtaaagcgtaatccaactaacccattcggaggagaaaccc |
2542499 |
T |
|
| Q |
177 |
atttgaatcatgatttctcgtaggtaatcccaatctaatctgtcatatgctttact |
232 |
Q |
| |
|
|||||||||||||| ||||| ||| |||||||||||||| | ||||| |||||||| |
|
|
| T |
2542498 |
atttgaatcatgatatctcgaaggaaatcccaatctaatatatcataagctttact |
2542443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 36482996 - 36483088
Alignment:
| Q |
119 |
gtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaatcatgatttctcgtaggtaatcccaatc |
211 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| |||||||| || ||||||||||| ||||||||||| || || || || |||||||| |
|
|
| T |
36482996 |
gtaatcaactgtctcaacacatagcataatccattgaacccatctagtagaaaaacccatctgaatcatgatatcacggagatattcccaatc |
36483088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 13962975 - 13962881
Alignment:
| Q |
26 |
aatgataaataaataaggtgagaaaggatccccttgacggagaccgcgtcctggcacaataggacccactgaagctctattaaccaaaaccgagt |
120 |
Q |
| |
|
|||||| || ||||||||||| | ||||| || | ||| || ||||| ||||||||||||||||||| ||| |||| ||||||||| ||||||| |
|
|
| T |
13962975 |
aatgatgaacaaataaggtgaaaggggatcaccctaacgaaggccgcgccctggcacaataggacccattgatgctccattaaccaagaccgagt |
13962881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 32955449 - 32955218
Alignment:
| Q |
1 |
taagggaagagagaccttcagtacaaatgataaataaataaggtgagaaaggatccccttgacggagaccgcgtcctggcacaataggacccactgaagc |
100 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
32955449 |
taagggaagagagtccttcagcacaaatgataaataaataaggtgagagaggatccccttgacggagaccgcgtcctagcacaataggacccactgatgc |
32955350 |
T |
|
| Q |
101 |
tctattaaccaaaaccgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaatcatgatttctcgtagg |
200 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32955349 |
tccattaaccaacaccgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaatcatgatttctcgtagg |
32955250 |
T |
|
| Q |
201 |
taatcccaatctaatctgtcatatgctttact |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
32955249 |
taatcccaatctaatctgtcatatgctttact |
32955218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 7606202 - 7605966
Alignment:
| Q |
3 |
agggaagagagaccttcagtacaaatgataaataaataaggtgagaaaggatccccttgacggagaccgcgtcctggcacaataggacccactgaagctc |
102 |
Q |
| |
|
||||| || |||||| ||| ||||||||| || || |||||||| | ||||| || ||||| || |||| ||||| |||||||||||| ||| |||| |
|
|
| T |
7606202 |
agggaggaaagacctccagcacaaatgatgaacaa-taaggtgaaaggggatcaccctgacgaaggtcgcgccctggtacaataggaccctttgatgctc |
7606104 |
T |
|
| Q |
103 |
tattaaccaaaaccgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaatcatgatttctcgtaggta |
202 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| |||||||| || |
|
|
| T |
7606103 |
cattaaccaagaccgagtaatcaaccgtctcaacacaaagcataattcagctaacccatcgagatgagaaacccatttgaatcatgatatctcgtagata |
7606004 |
T |
|
| Q |
203 |
atcccaatctaatctgtcatatgctttactgatgtcca |
240 |
Q |
| |
|
||||||||||| ||| ||||| |||||||| ||||||| |
|
|
| T |
7606003 |
atcccaatctagtctatcataagctttactaatgtcca |
7605966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 328122 - 328054
Alignment:
| Q |
119 |
gtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaatcat |
187 |
Q |
| |
|
||||||||| |||||||| || ||||||||||| |||||||| || ||||||||||| |||||||| |
|
|
| T |
328122 |
gtaatcaactgtctcaacgcatagcataatccactgaacccatctagcagaaaaacccatctgaatcat |
328054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 3964422 - 3964661
Alignment:
| Q |
1 |
taagggaagagagaccttcagtacaaatgataaataaataaggtgagaaaggatccccttgacggagaccgcgtcctggcacaataggacccactgaagc |
100 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||| ||| || |
|
|
| T |
3964422 |
taagggaagagagaccttcagcataaatgataaataaataaggtgagagaggatccccttgacggagtccgcgtccttgcacaataggacccattgatgc |
3964521 |
T |
|
| Q |
101 |
tctattaaccaaaaccgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaatcatgatttctcgtagg |
200 |
Q |
| |
|
|| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3964522 |
tccattaaccaatactgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaatcatgatttctcgtagg |
3964621 |
T |
|
| Q |
201 |
taatcccaatctaatctgtcatatgctttactgatgtcca |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3964622 |
taatcccaatctaatctgtcatatgctttactaatgtcca |
3964661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 24018519 - 24018440
Alignment:
| Q |
104 |
attaaccaaaaccgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaa |
183 |
Q |
| |
|
|||||||| |||| | || || |||||||||||||| | ||||||| |||||||||| | ||||||||| ||| |||||| |
|
|
| T |
24018519 |
attaaccagaacctaatagtctaccgtctcaacacataacataatcaaactaacccaacaagatgaaaatcccttttgaa |
24018440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 10998045 - 10997805
Alignment:
| Q |
1 |
taagggaagagagaccttcagtacaaatgataaataaataaggtgagaaaggatccccttgacggagaccgcgtcctggcacaataggacccactgaagc |
100 |
Q |
| |
|
||||||| ||||| |||||| |||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
10998045 |
taagggaggagagtccttcaacacaaatgataaataaataaggtgagagaggatccccctgacggaggccgcgtcctggcacaataggacccactgatgc |
10997946 |
T |
|
| Q |
101 |
tctattaaccaaaaccgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaa-cccatttgaatcatgatttctcgtag |
199 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
10997945 |
tccattaaccaaaatcgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagataaaaaatcccatttgaatcatgatttctcgtag |
10997846 |
T |
|
| Q |
200 |
gtaatcccaatctaatctgtcatatgctttactgatgtcca |
240 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
10997845 |
gtaatcccaatctaatctatcatatgctttactaatgtcca |
10997805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 3 - 240
Target Start/End: Original strand, 32284895 - 32285132
Alignment:
| Q |
3 |
agggaagagagaccttcagtacaaatgataaataaataaggtgagaaaggatccccttgacggagaccgcgtcctggcacaataggacccactgaagctc |
102 |
Q |
| |
|
||||| || ||||||||| ||||||||| || ||||||||||| | |||||| || ||||| || || || ||||| |||||||||||||| || |||| |
|
|
| T |
32284895 |
agggaggaaagaccttcaacacaaatgatgaacaaataaggtgaaagaggatcaccctgacgaaggccacgccctggtacaataggacccaccgatgctc |
32284994 |
T |
|
| Q |
103 |
tattaaccaaaaccgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaatcatgatttctcgtaggta |
202 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||| || |
|
|
| T |
32284995 |
cattaaccaagaccgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgagaaacctaattgaatcatgatttctcgtagata |
32285094 |
T |
|
| Q |
203 |
atcccaatctaatctgtcatatgctttactgatgtcca |
240 |
Q |
| |
|
||||||||||| | | ||||| |||||||| ||||||| |
|
|
| T |
32285095 |
atcccaatctagtatatcataagctttactaatgtcca |
32285132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 75 - 232
Target Start/End: Complemental strand, 26706187 - 26706030
Alignment:
| Q |
75 |
cctggcacaataggacccactgaagctctattaaccaaaaccgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaac |
174 |
Q |
| |
|
||||| ||||||| |||||| || ||| ||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
26706187 |
cctggtacaatagaacccaccgatgctgcattaaccaagacggagtaatcaaccgtctcaacacaaagcataatccagctaacccatcgagatgagaaac |
26706088 |
T |
|
| Q |
175 |
ccatttgaatcatgatttctcgtaggtaatcccaatctaatctgtcatatgctttact |
232 |
Q |
| |
|
|||||||||||||||| ||| |||| || ||||||||||| || ||||| |||||||| |
|
|
| T |
26706087 |
ccatttgaatcatgatatcttgtagatagtcccaatctaacctatcataagctttact |
26706030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 14503720 - 14503630
Alignment:
| Q |
1 |
taagggaagagagaccttcagtacaaatgataaataaataaggtgagaaaggatccccttgacggagaccgcgtcctggcacaataggacc |
91 |
Q |
| |
|
|||| ||||| | |||||| | |||||| ||||| || || || |||| ||||||||||||||||||||| || ||||| | ||||||||| |
|
|
| T |
14503720 |
taagcgaagataaaccttctgcacaaataataaacaagtacggagagagaggatccccttgacggagaccccgccctggaataataggacc |
14503630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 46092644 - 46092883
Alignment:
| Q |
1 |
taagggaagagagaccttcagtacaaatgataaataaataaggtgagaaaggatccccttgacggagaccgcgtcctggcacaataggacccactgaagc |
100 |
Q |
| |
|
||||||| ||||| ||||||| |||||||||||||||||||||||||| |||||| || |||||||| ||||||||||| ||||||||||||||||| || |
|
|
| T |
46092644 |
taagggaggagagtccttcagcacaaatgataaataaataaggtgagagaggatctccctgacggaggccgcgtcctggaacaataggacccactgatgc |
46092743 |
T |
|
| Q |
101 |
tctattaaccaaaaccgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaatcatgatttctcgtagg |
200 |
Q |
| |
|
|| |||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46092744 |
tccattaacaaaaactgagtaatcaaccgtctcaacacaaaacataatccaactaacccatcaagatgaaaaacccatttgaatcatgattcctcgtagg |
46092843 |
T |
|
| Q |
201 |
taatcccaatctaatctgtcatatgctttactgatgtcca |
240 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
46092844 |
taatcccaatctaatctatcatatgctttactaatgtcca |
46092883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 3 - 240
Target Start/End: Original strand, 51194002 - 51194239
Alignment:
| Q |
3 |
agggaagagagaccttcagtacaaatgataaataaataaggtgagaaaggatccccttgacggagaccgcgtcctggcacaataggacccactgaagctc |
102 |
Q |
| |
|
||||| || ||||||||| ||||||||| || ||||||||||| | |||||| |||||||| || |||| ||||| |||||||||||||| || |||| |
|
|
| T |
51194002 |
agggaggaaagaccttcaacacaaatgatgaacaaataaggtgaaagaggatcaccttgacgaaggtcgcgccctggtacaataggacccaccgatgctc |
51194101 |
T |
|
| Q |
103 |
tattaaccaaaaccgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaatcatgatttctcgtaggta |
202 |
Q |
| |
|
|||||||||| | ||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||| || |
|
|
| T |
51194102 |
tattaaccaagatcgagtaatcaattgtctcaacacaaagcataatccaactaaccgatcgagatgagaaacccatttgaatcatgatatctcgtagata |
51194201 |
T |
|
| Q |
203 |
atcccaatctaatctgtcatatgctttactgatgtcca |
240 |
Q |
| |
|
|| |||||||| ||| ||||| |||||||| ||||||| |
|
|
| T |
51194202 |
attccaatctagtctatcataagctttactaatgtcca |
51194239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 21687828 - 21687613
Alignment:
| Q |
1 |
taagggaagagagaccttcagtacaaatgataaataaataaggtgagaaaggatccccttgacggagaccgcgtcctggcacaataggacccactgaagc |
100 |
Q |
| |
|
||||| |||| ||||||||| ||| ||||| || ||||||||||||| |||||| || | | | || ||| ||||||||||||||||||||||| || |
|
|
| T |
21687828 |
taaggaaagaaagaccttcaacacagatgatgaacaaataaggtgagagaggatcaccctaatgaaggtcgcaccctggcacaataggacccactgatgc |
21687729 |
T |
|
| Q |
101 |
tctattaaccaaaaccgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaatcatgatttctcgtagg |
200 |
Q |
| |
|
|| ||||||||| | |||||| |||||||||||||||||||| |||||| |||||||||||| ||| ||||| ||||||||||||||||| ||||||| | |
|
|
| T |
21687728 |
tccattaaccaagatcgagtagtcaaccgtctcaacacaaaggataatctaactaacccatctagaggaaaaccccatttgaatcatgatatctcgtaag |
21687629 |
T |
|
| Q |
201 |
taatcccaatctaatc |
216 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
21687628 |
tagtcccaatctaatc |
21687613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 8563946 - 8563905
Alignment:
| Q |
50 |
aggatccccttgacggagaccgcgtcctggcacaataggacc |
91 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
8563946 |
aggatccccttgacggagaccgcgtcctggaataataggacc |
8563905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 6008176 - 6008266
Alignment:
| Q |
1 |
taagggaagagagaccttcagtacaaatgataaataaataaggtgagaaaggatccccttgacggagaccgcgtcctggcacaataggacc |
91 |
Q |
| |
|
|||| ||||| | |||||| | |||||| ||||| || || || |||| ||||||||||||||||||||| || ||||| | ||||||||| |
|
|
| T |
6008176 |
taagcgaagataaaccttctgcacaaataataaacaagtacggagagacaggatccccttgacggagaccccgccctggaataataggacc |
6008266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 10983188 - 10983232
Alignment:
| Q |
191 |
ttctcgtaggtaatcccaatctaatctgtcatatgctttactgat |
235 |
Q |
| |
|
||||||||| || |||||||||| |||||||||||| |||||||| |
|
|
| T |
10983188 |
ttctcgtagatattcccaatctattctgtcatatgccttactgat |
10983232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 232
Target Start/End: Complemental strand, 10211305 - 10211075
Alignment:
| Q |
2 |
aagggaagagagaccttcagtacaaatgataaataaataaggtgagaaaggatccccttgacggagaccgcgtcctggcacaataggacccactgaagct |
101 |
Q |
| |
|
|||||| ||||| |||||| |||||| || || | ||||||||| | |||||| |||||||| || |||| |||||||||||||||||||| || ||| |
|
|
| T |
10211305 |
aagggaggagaggccttcaacacaaataatgaacagataaggtgaaagaggatcaccttgacgaaggtcgcgccctggcacaataggacccaccgatgct |
10211206 |
T |
|
| Q |
102 |
ctattaaccaaaaccgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaatcatgatttctcgtaggt |
201 |
Q |
| |
|
| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||| || |||||||||||| ||||||| ||||| |||| |
|
|
| T |
10211205 |
ccattaaccaagaccgagtaatcaactgtctcaacacaaagcataatccaactaacccatctagaggagaaacccatttgagtcatgatatctcgaaggt |
10211106 |
T |
|
| Q |
202 |
aatcccaatctaatctgtcatatgctttact |
232 |
Q |
| |
|
||||||| |||||||| ||||| |||||||| |
|
|
| T |
10211105 |
aatcccagtctaatctatcataagctttact |
10211075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 23 - 240
Target Start/End: Original strand, 23771971 - 23772188
Alignment:
| Q |
23 |
acaaatgataaataaataaggtgagaaaggatccccttgacggagaccgcgtcctggcacaataggacccactgaagctctattaaccaaaaccgagtaa |
122 |
Q |
| |
|
||||||||| |||||||||||||| | ||||| || ||||| || | || ||||| |||||||||| ||||| |||| |||||| | || || ||| |
|
|
| T |
23771971 |
acaaatgatgaataaataaggtgaaatgggatcaccctgacgaaggctgcaccctggtacaataggacacactggtgctccgttaacctagactgaataa |
23772070 |
T |
|
| Q |
123 |
tcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaatcatgatttctcgtaggtaatcccaatctaatctgtcat |
222 |
Q |
| |
|
||| |||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||| ||| |||| |
|
|
| T |
23772071 |
tcatccgtctcaacacaaagcataatacagctaacccatcgagatgagaaacccatttgaatcatgatatctcgtagataatcccaatctagtctatcat |
23772170 |
T |
|
| Q |
223 |
atgctttactgatgtcca |
240 |
Q |
| |
|
| |||||||| ||||||| |
|
|
| T |
23772171 |
aagctttactaatgtcca |
23772188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 214474 - 214235
Alignment:
| Q |
1 |
taagggaagagagaccttcagtacaaatgataaataaataaggtgagaaaggatccccttgacggagaccgcgtcctggcacaataggacccactgaagc |
100 |
Q |
| |
|
||||||| || | |||||||| ||||||||| || ||||||||||| | ||||| || ||||| || ||| ||||||| | ||||||| |||| || || |
|
|
| T |
214474 |
taagggaggaaaaaccttcagcacaaatgatgaacaaataaggtgaaaggggatcaccctgacgaaggccgtgtcctggtagaataggatccaccgatgc |
214375 |
T |
|
| Q |
101 |
tctattaaccaaaaccgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaatcatgatttctcgtagg |
200 |
Q |
| |
|
|| ||||||||| |||||||||||||| | ||||||||||||||||||||| |||| |||||||||||| ||||||||||||| |||||| |||||||| |
|
|
| T |
214374 |
tccattaaccaagaccgagtaatcaactgcctcaacacaaagcataatccagctaatccatcgagatgagaaacccatttgaagcatgatatctcgtaga |
214275 |
T |
|
| Q |
201 |
taatcccaatctaatctgtcatatgctttactgatgtcca |
240 |
Q |
| |
|
||||||||||||| ||| ||||| |||||||||||||||| |
|
|
| T |
214274 |
taatcccaatctagtctatcataagctttactgatgtcca |
214235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 54472 - 54252
Alignment:
| Q |
12 |
agaccttcagtacaaatgataaataaataaggtgagaaaggatccccttgacggagaccgcgtcctggcacaataggacccactgaagctctattaacca |
111 |
Q |
| |
|
||||||||| ||||||||| || ||||||||||| | || ||||| ||||| || |||| ||| | | |||||||||||| | |||| |||||||| |
|
|
| T |
54472 |
agaccttcatcacaaatgatgaacaaataaggtgaaagggggtccccctgacgaaggccgcaccctagtaaaataggacccaccaatgctccattaacca |
54373 |
T |
|
| Q |
112 |
aaaccgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaatcatgatttctcgtaggtaatcccaatc |
211 |
Q |
| |
|
| |||||||||| ||||||||||||||||| ||||||||| ||||||||| |||| || |||||||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
54372 |
agaccgagtaattaaccgtctcaacacaaaacataatccagctaacccattgagacgagaaacccatttgaatcatgatatctcgcagataatcccaatc |
54273 |
T |
|
| Q |
212 |
taatctgtcatatgctttact |
232 |
Q |
| |
|
|| ||| ||||| |||||||| |
|
|
| T |
54272 |
tagtctatcataagctttact |
54252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0577 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0577
Description:
Target: scaffold0577; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 69 - 232
Target Start/End: Original strand, 4385 - 4548
Alignment:
| Q |
69 |
ccgcgtcctggcacaataggacccactgaagctctattaaccaaaaccgagtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatg |
168 |
Q |
| |
|
||||| ||| ||||||||| |||||| || |||| | ||||||| | |||||||||||||||||||||| |||||||| |||| | |||||||||||| | |
|
|
| T |
4385 |
ccgcgccctagcacaatagaacccaccgatgctccaataaccaagatcgagtaatcaaccgtctcaacataaagcatagtccagcaaacccatcgagagg |
4484 |
T |
|
| Q |
169 |
aaaaacccatttgaatcatgatttctcgtaggtaatcccaatctaatctgtcatatgctttact |
232 |
Q |
| |
|
| |||||||||||| ||||||| |||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
4485 |
agaaacccatttgattcatgatatctcgtaggtaatcccaatctaatctatcataagctttact |
4548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0570
Description:
Target: scaffold0570; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 7072 - 7143
Alignment:
| Q |
119 |
gtaatcaaccgtctcaacacaaagcataatccaactaacccatcgagatgaaaaacccatttgaatcatgat |
190 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| |||||||| || ||||||||||| ||||||||||| |
|
|
| T |
7072 |
gtaatcaactgtctcaacacatagcataatccattgaacccatctagtagaaaaacccatctgaatcatgat |
7143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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