View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7033_high_20 (Length: 248)
Name: NF7033_high_20
Description: NF7033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7033_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 3 - 232
Target Start/End: Original strand, 1669316 - 1669558
Alignment:
| Q |
3 |
ttcttgtggctaaattcacagtaccatatcaaactcatgttcattacnnnnnnnagtttgcacaaaaggtgcttgatgaaatgtctacttcatatcaata |
102 |
Q |
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| T |
1669316 |
ttcttgtggctaaattgacagtaccatatctaactcatgttcatttctttttttagtttgcacaaaaggtgcttgatgaaatgtctacttcatatcaata |
1669415 |
T |
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| Q |
103 |
ttttttaatgtttatttatagtatctacttaaaagttagaactgaaaaa-------------ttatttttctattctcttttattttaatactactgtac |
189 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| ||||||| | ||||||| ||||||||||||||||||||| ||||| |
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| T |
1669416 |
ttttttaatgtttatttatagtatctacttataagttagaattgaaaaatactttaatagtttgatttttcgattctcttttattttaatactgttgtac |
1669515 |
T |
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| Q |
190 |
atgattgttaatgcaggagaacatggatgttgatgatgttcct |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1669516 |
atgattgttaatgcaggagaacatggatgttgatgatgttcct |
1669558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 3 - 232
Target Start/End: Complemental strand, 44273163 - 44272921
Alignment:
| Q |
3 |
ttcttgtggctaaattcacagtaccatatcaaactcatgttcattacnnnnnnnagtttgcacaaaaggtgcttgatgaaatgtctacttcatatcaata |
102 |
Q |
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|||||||||||||||| ||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44273163 |
ttcttgtggctaaattgacagtaccatatctaactcatgttcatttctttttttagtttgcacaaaaggtgcttgatgaaatgtctacttcatatcaata |
44273064 |
T |
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| Q |
103 |
ttttttaatgtttatttatagtatctacttaaaagttagaactgaaaaa-------------ttatttttctattctcttttattttaatactactgtac |
189 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| ||||||| | ||||||| ||||||||||||||||||||| ||||| |
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| T |
44273063 |
ttttttaatgtttatttatagtatctacttataagttagaattgaaaaatactttaatagtttgatttttcgattctcttttattttaatactgttgtac |
44272964 |
T |
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| Q |
190 |
atgattgttaatgcaggagaacatggatgttgatgatgttcct |
232 |
Q |
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| T |
44272963 |
atgattgttaatgcaggagaacatggatgttgatgatgttcct |
44272921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 20872914 - 20872964
Alignment:
| Q |
57 |
agtttgcacaaaaggtgcttgatgaaatgtctacttcatatcaatattttt |
107 |
Q |
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| T |
20872914 |
agtttgcacacaaggtgcttgatgaaatgtctacttcatatcaatattttt |
20872964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 3 - 232
Target Start/End: Complemental strand, 26074387 - 26074145
Alignment:
| Q |
3 |
ttcttgtggctaaattcacagtaccatatcaaactcatgttcattacnnnnnnnagtttgcacaaaaggtgcttgatgaaatgtctacttcatatcaata |
102 |
Q |
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|||||||||||||||| ||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26074387 |
ttcttgtggctaaattgacagtaccatatctaactcatgttcatttctttttttagtttgcacaaaaggtgcttgatgaaatgtctacttcatatcaata |
26074288 |
T |
|
| Q |
103 |
ttttttaatgtttatttatagtatctacttaaaagttagaactgaaaaa-------------ttatttttctattctcttttattttaatactactgtac |
189 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| ||||||| | |||||| ||||||||||| |||||||||| ||||| |
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| T |
26074287 |
ttttttaatgtttatttatagtatctacttataagttagaattgaaaaatactttaatagtttgattttttgattctcttttactttaatactattgtac |
26074188 |
T |
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| Q |
190 |
atgattgttaatgcaggagaacatggatgttgatgatgttcct |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26074187 |
atgattgttaatgcaggagaacatggatgttgatgatgttcct |
26074145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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