View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7033_high_24 (Length: 242)
Name: NF7033_high_24
Description: NF7033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7033_high_24 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 242
Target Start/End: Original strand, 34696905 - 34697135
Alignment:
| Q |
12 |
catcatgtaaagggtcttcaaacaagcaatctcgtgtagggagtgcgtaatgttgacaacgcaagatagaaccatcaggcaaaacaagagttttaagcaa |
111 |
Q |
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| T |
34696905 |
catcatgtaaagggtcttcaaacaagcaatctcgtgtagggagtgcgtaatgttgacaacgcaagatagaaccatcaggcaaaacaagagttttaagcaa |
34697004 |
T |
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| Q |
112 |
cttgaaattgtgattaccgacacaatcgctaacataaattggtccaccggagacagctctagaggcagcatgaaattcagcacaagggtgagtggattga |
211 |
Q |
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| T |
34697005 |
cttgaaattgtgattaccgacacaatcgctaacataaattggtccaccagagacagctctagaggcagcatgaaattcagcacaagggtgagtggattga |
34697104 |
T |
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| Q |
212 |
aacatgtcccaatctgggtgaatgaaatttc |
242 |
Q |
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| T |
34697105 |
aacatgtcccaatctgggtgaatgaaatttc |
34697135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 242
Target Start/End: Original strand, 43637659 - 43637889
Alignment:
| Q |
12 |
catcatgtaaagggtcttcaaacaagcaatctcgtgtagggagtgcgtaatgttgacaacgcaagatagaaccatcaggcaaaacaagagttttaagcaa |
111 |
Q |
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| T |
43637659 |
catcatgtaaagggtctacaaataaagagtctctcgttggaagtgcataatgttgacaccgcaaaatcgatccatccggcaaaaccagcttcttgagtaa |
43637758 |
T |
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| Q |
112 |
cttgaaattgtgattaccgacacaatcgctaacataaattggtccaccggagacagctctagaggcagcatgaaattcagcacaagggtgagtggattga |
211 |
Q |
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| T |
43637759 |
cttgaagttgtggtttccaacagagtcgcttacataaattggtccgccagagattgctcgagaagcagcatgaaattcagaacaagcatgatgagattgg |
43637858 |
T |
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| Q |
212 |
aacatgtcccaatctgggtgaatgaaatttc |
242 |
Q |
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| T |
43637859 |
aacatgtcccaatctggttgtataaaatttc |
43637889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 242
Target Start/End: Complemental strand, 489041 - 488945
Alignment:
| Q |
146 |
taaattggtccaccggagacagctctagaggcagcatgaaattcagcacaagggtgagtggattgaaacatgtcccaatctgggtgaatgaaatttc |
242 |
Q |
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| T |
489041 |
taaattggaccaccagatatggctctagaagctgcatgaaaagcagcacaagggtgtgtagattgaaacatatcccaatctggttggatgaaatttc |
488945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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