View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7033_high_25 (Length: 241)
Name: NF7033_high_25
Description: NF7033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7033_high_25 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 5135544 - 5135318
Alignment:
| Q |
1 |
ctcattatagaccctgaatgatcagctatttgaaccgtactatgagttataacattcat--gtcttttaacaaattggacaggacagtcttcaacctagt |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5135544 |
ctcattatagaccctgaatgatcagctatttgaaccgtattatgagttataacattcatatgtcttctaacaaattggacaggacagtcttcaacctagt |
5135445 |
T |
|
| Q |
99 |
gtagcaatgagttcattcaccataacatttgtctctaaggttgtgacttcttacttttcaccaatatgttggatatgtatacttgaaacggttgatcagt |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5135444 |
ttagcaatgagttcattcaccataacatttgtctctaaggttgtgacttcttacttttcaccaatatgttggatatgtatacttgaaacggttgatcagt |
5135345 |
T |
|
| Q |
199 |
ttttgaaagggggtatgtgctcaccat |
225 |
Q |
| |
|
||||||||||||||| |||| |||||| |
|
|
| T |
5135344 |
ttttgaaagggggtaagtgcccaccat |
5135318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 5100270 - 5100057
Alignment:
| Q |
1 |
ctcattatagaccctgaatgatcagctatttgaaccgtactatgagttataacattcat--gtcttttaacaaattggacaggacagtcttcaacctagt |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5100270 |
ctcattatagaccctgaatgatcagctatttgaaccgtactatgagttataacattcatatgtcttttaacaaattggacaggacagtcttcaacctagt |
5100171 |
T |
|
| Q |
99 |
gtagcaatgagttcattcaccataacatttgtctctaaggttgtgacttcttacttttcaccaatatgttggatatgtatacttgaaacggttgatcagt |
198 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5100170 |
ttagcaatgtgttcattcaccataacatttgtctctaaggttgtgacttcttacttttcaccaatatgttggatatgaatacttgaaacggttgatcagt |
5100071 |
T |
|
| Q |
199 |
ttttgaaagggggt |
212 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5100070 |
ttttgaaagggggt |
5100057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 111
Target Start/End: Original strand, 2939617 - 2939723
Alignment:
| Q |
6 |
tatagaccctgaatgatcagctatttgaaccgtactatgagttataacattcatg-tcttttaacaaattggacaggacagtcttcaacctagtgtagca |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||| ||||||||| ||| | ||||||||||||| ||||||||| |||||| ||||| ||| | |
|
|
| T |
2939617 |
tatagaccctgaatgatcagctatttgaaccatactacgagctataacatttatgtttttttaacaaattgcacaggacagacttcaatctagtttagta |
2939716 |
T |
|
| Q |
105 |
atgagtt |
111 |
Q |
| |
|
|| |||| |
|
|
| T |
2939717 |
ataagtt |
2939723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University